Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3106 334 6e-87 seq3143 109 4e-19 seq3018 95.1 1e-14 >seq3106 Length=22756556 Score = 334 bits (370), Expect = 6e-87 Identities = 629/911 (69%), Gaps = 18/911 (2%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||||| || || || || || | ||||| ||||| || | || Sbjct 216656 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 216715 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| ||||| || || || || || ||||| ||||||| |||||||| ||| | Sbjct 216716 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGATCTT 216775 Query 61147 TCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||||||||| | ||||||| || | | | || || | | || || ||| Sbjct 216776 TCCAAAGACATTCAGCACTGGGAAGCCCTGAA-GCCCGAGGAGAGATACTTTATATCACA 216834 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 || |||| ||||||||||| || || || |||||||||||||| |||| || || Sbjct 216835 CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCGGTT 216894 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | || || || ||| | | ||||| || |||||||||||||||||||| |||||||| Sbjct 216895 CAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGA 216954 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385 || | || || || ||||||||| | ||||||||||| || |||| || || Sbjct 216955 AAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCCAGAGA 217014 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | || | ||||||||||||||||| || || ||||| ||| |||| || Sbjct 217015 AAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCCTGTGTGAA---GAAGTCGGACTG 217071 Query 61446 GGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTT 61503 |||||| ||||| | |||| ||| || | ||| ||||| || | || ||| Sbjct 217072 GGCCTTGCGCTGGAT--TGGGGACAAAGAGGCCACTTATGGGGAACGCGTGGTAGCCTTT 217129 Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563 || | || || || | ||||| ||| || ||||| | ||||| ||| |||||||| Sbjct 217130 GCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGCTGAAGAAA 217189 Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCAT 61622 || ||||| |||||||| || ||||| |||||| | || | || | || |||||| | Sbjct 217190 CGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCA-GAGATGAGGGCCT 217248 Query 61623 GCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGA 61682 ||| ||||| || || || | ||||| | | ||| || || | || || ||| | Sbjct 217249 GCACTGTGACTTCGCCTGCCTGATGTTCAAGC---ACCTGATGCATAGACCCTCAGAGCA 217305 Query 61683 GCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | | ||| |||||| |||| | || || | ||||| ||||| || || || || | Sbjct 217306 GAGGGTGAAGGAGATT-ATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGGAGG 217364 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 | ||||| || || || |||||||| || | || ||| |||||| || || || | Sbjct 217365 CCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGTTCG 217424 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCA 61860 | || ||| | || || | || |||| | || || | | | | | |||| ||| Sbjct 217425 TGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGG-TTTTTCAAGTGGAAAATCCA 217483 Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920 ||||| |||||||| | ||||| || || || ||||| || || || ||||| | ||| Sbjct 217484 TTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGAAGAGGGTA 217543 Query 61921 GGCGACTATCA 61931 ||||| ||||| Sbjct 217544 GGCGAGTATCA 217554 >seq3143 Length=88675666 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||| || | ||||| || || |||||||||||||||| Sbjct 4804219 TGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGA 4804278 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||| ||||| |||||||| ||||||||||| | |||||||| || || ||||| | Sbjct 4804279 TCCTCATCGAGAACGTCCACTCCGAGATGTACAGCCTGCTCATCGACACCTATATCAGAG 4804338 Query 61376 AGC 61378 ||| Sbjct 4804339 AGC 4804341 >seq3018 Length=3443724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||| | | ||||| || ||||||||||||||||||| Sbjct 3378125 TGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGA 3378066 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | |||||||| || | || || || ||||||||| | ||||||||||| || |||| Sbjct 3378065 TCGCCATGGAAAACATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCA 3378009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397552766188160