Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 334 6e-87
seq3143 109 4e-19
seq3018 95.1 1e-14
>seq3106
Length=22756556
Score = 334 bits (370), Expect = 6e-87
Identities = 629/911 (69%), Gaps = 18/911 (2%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || || |||||| || || || || || | ||||| ||||| || | ||
Sbjct 216656 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 216715
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146
||||||| ||||| || || || || || ||||| ||||||| |||||||| ||| |
Sbjct 216716 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGATCTT 216775
Query 61147 TCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205
||||||||||| | ||||||| || | | | || || | | || || |||
Sbjct 216776 TCCAAAGACATTCAGCACTGGGAAGCCCTGAA-GCCCGAGGAGAGATACTTTATATCACA 216834
Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265
|| |||| ||||||||||| || || || |||||||||||||| |||| || ||
Sbjct 216835 CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCGGTT 216894
Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| || || || ||| | | ||||| || |||||||||||||||||||| ||||||||
Sbjct 216895 CAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGA 216954
Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA 61385
|| | || || || ||||||||| | ||||||||||| || |||| || ||
Sbjct 216955 AAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCCAGAGA 217014
Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445
| | || | ||||||||||||||||| || || ||||| ||| |||| ||
Sbjct 217015 AAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCCTGTGTGAA---GAAGTCGGACTG 217071
Query 61446 GGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTT 61503
|||||| ||||| | |||| ||| || | ||| ||||| || | || |||
Sbjct 217072 GGCCTTGCGCTGGAT--TGGGGACAAAGAGGCCACTTATGGGGAACGCGTGGTAGCCTTT 217129
Query 61504 GCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAA 61563
|| | || || || | ||||| ||| || ||||| | ||||| ||| ||||||||
Sbjct 217130 GCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGCTGAAGAAA 217189
Query 61564 CGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCAT 61622
|| ||||| |||||||| || ||||| |||||| | || | || | || |||||| |
Sbjct 217190 CGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCA-GAGATGAGGGCCT 217248
Query 61623 GCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGA 61682
||| ||||| || || || | ||||| | | ||| || || | || || ||| |
Sbjct 217249 GCACTGTGACTTCGCCTGCCTGATGTTCAAGC---ACCTGATGCATAGACCCTCAGAGCA 217305
Query 61683 GCGTGTGGGTGAGATTGTTCGT-GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741
| | ||| |||||| |||| | || || | ||||| ||||| || || || || |
Sbjct 217306 GAGGGTGAAGGAGATT-ATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGGAGG 217364
Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801
| ||||| || || || |||||||| || | || ||| |||||| || || || |
Sbjct 217365 CCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGTTCG 217424
Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCA 61860
| || ||| | || || | || |||| | || || | | | | | |||| |||
Sbjct 217425 TGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGG-TTTTTCAAGTGGAAAATCCA 217483
Query 61861 TTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTA 61920
||||| |||||||| | ||||| || || || ||||| || || || ||||| | |||
Sbjct 217484 TTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGAAGAGGGTA 217543
Query 61921 GGCGACTATCA 61931
||||| |||||
Sbjct 217544 GGCGAGTATCA 217554
>seq3143
Length=88675666
Score = 109 bits (120), Expect = 4e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||||||||| || | ||||| || || ||||||||||||||||
Sbjct 4804219 TGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGA 4804278
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||| ||||| |||||||| ||||||||||| | |||||||| || || ||||| |
Sbjct 4804279 TCCTCATCGAGAACGTCCACTCCGAGATGTACAGCCTGCTCATCGACACCTATATCAGAG 4804338
Query 61376 AGC 61378
|||
Sbjct 4804339 AGC 4804341
>seq3018
Length=3443724
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || || ||| | | ||||| || |||||||||||||||||||
Sbjct 3378125 TGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGA 3378066
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
| |||||||| || | || || || ||||||||| | ||||||||||| || ||||
Sbjct 3378065 TCGCCATGGAAAACATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCA 3378009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397552766188160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |