Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 102 3e-19 seq6 82.4 3e-13 >seq5 Length=43145420 Score = 102 bits (112), Expect = 3e-19 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||||| | ||||| ||| ||| Sbjct 7639884 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAATTCCATCTAAGGCTGAAT 7639825 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||||| || | ||| | ||||||| |||||| | Sbjct 7639824 ACCGGCACGAGACCGATAGTCAACAAGTGCCGTAAGGGAAGGTTGAAAAGAACTTTGAAG 7639765 Query 160 AGAGAGTTAAA 170 |||||||| || Sbjct 7639764 AGAGAGTTCAA 7639754 >seq6 Length=43084221 Score = 82.4 bits (90), Expect = 3e-13 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||| |||||||||||| ||| ||||| |||| ||||||||||||||||| || Sbjct 6625530 TTAGGACATGAAAGATGGTGAGCTACGCCTGGTCAGGGCAAAGCCAGAGGAAACTCTTGT 6625589 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | || | | ||| || |||||||| | || || |||| |||| ||| || Sbjct 6625590 GGAGATCCATAGAGATCCTGATGTTCAAATCGACCATCCAACTTGGATATAAGGGTGA 6625647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079939103450