Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq27 136 6e-30 seq7 127 3e-27 seq54 82.4 1e-13 >seq27 Length=25933912 Score = 136 bits (150), Expect = 6e-30 Identities = 84/90 (93%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 5839908 TTATGGGAATTAACCAGACAAATCTCTCCACCAACTAAGAATGGCCATGCACCACCACCC 5839967 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| |||||||||||| |||||||| Sbjct 5839968 ACAGAATCGAGAAAGAGCTATTAATCTGTC 5839997 >seq7 Length=40563840 Score = 127 bits (140), Expect = 3e-27 Identities = 82/90 (91%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||||| Sbjct 796147 TTATTGGAATTAACCAGACAAATTGCTCCACCAACTGAGAATGGCCATGCACCACCACCC 796206 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| ||||||||||||| ||||||| Sbjct 796207 ACAGAATCGAGAAAGAGCTATCCATCTGTC 796236 >seq54 Length=16718083 Score = 82.4 bits (90), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| || | |||| || |||| | ||| ||||||||||||||||||||| | |||| Sbjct 9718764 GTCAGTCTA-CACGCGCGCAGCCCCGGACACCTAAGGGCATCACAGACCTGTCACTGCC- 9718707 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| ||| |||||| | |||| | |||||||||||||| Sbjct 9718706 CAATCTT-GGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 9718667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796778085759