Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq93 260 2e-67 seq13 129 1e-27 seq35 73.4 7e-11 >seq93 Length=8518247 Score = 260 bits (288), Expect = 2e-67 Identities = 216/263 (82%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| | Sbjct 4446737 CATCAGTAGGGTAAAGCTAACCTATCTCATGCTGGTCTAAACCCAGCTCACGTTCCCTCT 4446678 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||| |||||||| ||| ||| |||||||| |||||||||||||| || Sbjct 4446677 TAGTGGGTGAATAATCCAACACTTGGTGAACTCTGCTTCACAATGATAGGAAGAGCTAAC 4446618 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||||||||||||| || | |||||||| ||||||| ||||||||||||||||| | Sbjct 4446617 ATTAAAGGATCAAAAAGCGACATGGCTATGAATGCTTGGCCGCCACAAGCCAGTTATCAC 4446558 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||| |||||| || | ||| | || | |||||||| |||| Sbjct 4446557 --TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCGAAAGGTCAGAAGGATCGTGAGGC 4446500 Query 272 CACACTTTCATGGTTTGTATTCA 294 | |||||| ||| |||||||| Sbjct 4446499 CCTGCTTTCACGGTCTGTATTCA 4446477 >seq13 Length=33879094 Score = 129 bits (142), Expect = 1e-27 Identities = 171/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 |||| |||| |||| ||||||||||| |||||||||||| || || Sbjct 32112026 TCAGCAGGGCAAAAGTAACCTGTCTCGC-ACGGTCTAAACCT-------------TACTA 32112071 Query 94 GTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153 ||||||||||||||| | |||| | || ||||| |||| || ||| |||||| | Sbjct 32112072 GTGGGTGAACAATCCCAGGCTTTGAGCATATCGCTTCACAATGACAGCAAGGGCCGACGT 32112131 Query 154 CGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||| ||||||||||| | |||||| || |||| ||||||| ||||||||| ||| | Sbjct 32112132 GGAAAGATCAAAAAGCGAGGTCGCTGTGGTCGCTGGGCTGCCGGGAGCCAGTTAGCCCCG 32112191 Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||| |||||| ||| | |||| || ||||| | || | |||||||| ||||| Sbjct 32112192 TGGGAACTTTCCTGACTCCTCCTGCTTCAAACCCAGGCGGTCAGAAGGATCGTGAGGCC 32112250 >seq35 Length=22390816 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| ||||||||||||| |||| ||| |||||||||||| | |||||||||||||| Sbjct 20906624 ATTCGTGGGTGAACAATGCAACACTTGGTGAATTCTGCTTCCCAAAGATAGGAAGAGCCG 20906565 Query 150 ACATCGAAGGATC 162 ||||| || ||| Sbjct 20906564 ACATCAGAGTATC 20906552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854375743584