Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20 390 4e-106 seq102 320 5e-85 seq38 127 7e-27 seq14 95.1 4e-17 seq24 77.0 1e-11 >seq20 Length=30177268 Score = 390 bits (432), Expect = 4e-106 Identities = 267/300 (89%), Gaps = 3/300 (1%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 || |||||||||||| || |||||| | ||| ||||| | | | ||||||||||||||| Sbjct 5531914 CGCCTCCCACTTATTTTATACCTCTTATGTCTCTTCACCATGCCAGACTAGAGTCAAGCT 5531855 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||| | || |||||||||||||||||||||| ||||||||||||||||| Sbjct 5531854 CAACAGGGTCTT---TGCCTGCTGATTCCGCCAAGCCCGTTCTCTTGGCTGTGGTTTCGC 5531798 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | |||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||| Sbjct 5531797 TGGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATGCATGCGCGTCACTAATTAG 5531738 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||| ||||||| ||||| ||||||||| |||||| |||||||||||||||| Sbjct 5531737 ATGACGAGGCGTTTGGCTGCCTTAGGAGAGTCATCGTTACTTGGGCCGTTTACCCGCGCT 5531678 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 5531677 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGAGTCAGCA 5531618 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||| | | |||| ||||| | |||| |||| | |||||||||||| |||||| Sbjct 5532200 CTTCTGCCCCATGGGAGGTTTCTCTCCTCCCTGAGCTCGCCTTAGGACACCGGCGTTACC 5532141 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| | ||||||| ||||| ||||||||| || |||| Sbjct 5532140 CTTTGACAGGTGTACAGCCCCAGTCAAACGCCCCACCTGGCACTGTC 5532094 >seq102 Length=8225135 Score = 320 bits (354), Expect = 5e-85 Identities = 249/302 (82%), Gaps = 21/302 (7%) Strand=Plus/Minus Query 253 ACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC 312 |||||||| ||| ||||| | | ||||||||| ||| |||||||| ||||||||||| Sbjct 6148004 ACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTTAAGTTCAACAGGATCTTCTTTCCC 6147945 Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||||| || |||||||||||||||||||||||||||| |||||||| | | |||| Sbjct 6147944 CGCTGATTCCACCGAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTGGCGACA 6147885 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||| ||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||| Sbjct 6147884 GTGGAAATCTCGTTCATCCATTCATGTGCGTCACTAATTAGATGATGAGGCGTTTGGCTA 6147825 Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT- 491 |||||||||||||||||||||| || | |||||| |||||| ||||||||||||||| Sbjct 6147824 CCTTAAGAGAGTCATAGTTACTACCACTGTTTACAAGCGCTTCATTGAATTTCTTCACTG 6147765 Query 492 --------------------TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||||||||||||||||| || ||||||| Sbjct 6147764 AAGCGACATTCTTCACTTCAGTGACATTCAGAGCACTGGGCAGAAATCATATCGCGTCAA 6147705 Query 532 CA 533 || Sbjct 6147704 CA 6147703 >seq38 Length=21260941 Score = 127 bits (140), Expect = 7e-27 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 ||||||||||||||||||| ||| |||||||| | | ||||| |||||||| || || | Sbjct 1963321 GTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTCAGAACAGTCGGAATCTCATTCATGC 1963380 Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 ||| || |||| | ||||||||||| || || |||||||| |||||| | | ||| || Sbjct 1963381 ATTTGTGTGCGTTAATAATTAGATGATGATGCTTTTGGCTATCTTAAGGGCGACATGATT 1963440 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||| ||| | |||| | | | |||||||| |||||||| Sbjct 1963441 ACTTCCGGCATTTAGCTGATCCGCACTGAATTTCCTCACTTTG 1963483 >seq14 Length=33208412 Score = 95.1 bits (104), Expect = 4e-17 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 310 CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG 369 |||| ||||||| |||| || ||||||||||||||||||| ||| || ||||| ||||| Sbjct 13183827 CCCCAGTGATTCCACCAAACCTGTTCCCTTGGCTGTGGTTTTGCTGGAGAGTAGGTAGGG 13183768 Query 370 ACAGTGGGAATCTCGTTAATCC 391 ||| ||||||||| ||| |||| Sbjct 13183767 ACACTGGGAATCTTGTTCATCC 13183746 >seq24 Length=27838296 Score = 77.0 bits (84), Expect = 1e-11 Identities = 143/201 (71%), Gaps = 13/201 (6%) Strand=Plus/Plus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||| ||| ||||||||| |||| ||||| | | | |||||| ||| Sbjct 13280614 GCCAAGCCA-TTCGCTTGGCTGTTGTTTTATCAGATAATGGGTGAAGACAGTAAGAAGAC 13280672 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||| | ||| || || | || ||||||||||||| | |||||||||| ||||| || Sbjct 13280673 CGTTCGTTCATCCACGCACTTCCCTAATTAGATGACAACGCATTTGGCT-CCTTA--GGA 13280729 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||| | | | || | |||||| | | ||||| ||||||||| || ||||| Sbjct 13280730 GTCATGGCCA-TGCCCTCATTTACCTGTAC-----TGAATGTCTTCACTTGGA-ATTCAC 13280782 Query 503 AGCACTGGGCAGAAATCACAT 523 || || ||| |||| ||||| Sbjct 13280783 AGTGCTAGGC-GAAA-CACAT 13280801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635153576672