Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chinchilla_20lanigera_20[refseq_20GCF_5F000276665.1_202012-08-28] 2,839 sequences; 2,390,868,971 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 seq16 102 6e-17 >seq13 Length=33879094 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || || || |||||||| || ||||| || || |||| |||||||| Sbjct 19878335 GGTATATTCTACTATCTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGTTG 19878276 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| |||||||| | ||| ||||| | ||||||||| || || ||||| || Sbjct 19878275 GTTGCTCTTCCGATTGCAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTG 19878216 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | |||||| Sbjct 19878215 GGACTCAATGATGGCATACCAAAG 19878192 >seq16 Length=31710007 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| ||||||||||| || | ||||| || || |||||||||||||||| Sbjct 26963980 TGGAACGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGA 26963921 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||| ||||| || ||||||||||||||||| | ||||| || | ||| |||| | Sbjct 26963920 TCCTCATCGAGAACGTTCACTCGGAGATGTACAGCTTGCTCATAGACGCCTACGTCAGAG 26963861 Query 61376 A 61376 | Sbjct 26963860 A 26963860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554244022960