Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22 104 4e-20 seq51888 80.6 5e-13 seq4598 77.0 6e-12 seq2886 77.0 6e-12 seq38210 75.2 2e-11 seq5524 75.2 2e-11 seq7077 73.4 7e-11 >seq22 Length=4665541 Score = 104 bits (114), Expect = 4e-20 Identities = 158/217 (73%), Gaps = 15/217 (7%) Strand=Plus/Minus Query 38 CATGCCCTTCACTGGGTGTGCC--GGGGAGCCAGGACTTTTACTTTGAAAAAATTAG-AG 94 ||||| ||| | | |||| || |||| ||| | | |||| | ||||||||||| || Sbjct 1138503 CATGCTCTTAGCCGAGTGTCCCATGGGGCCCCAAGGCATTTATTCTGAAAAAATTAACAG 1138444 Query 95 TGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTG 151 || |||||||| || | || | |||| ||| |||||||| ||||||||| || Sbjct 1138443 TGCTCAAAGCAAGCTTAAGCCACCAGGATACCACAGCTAGGAATAATGGAATAGGAC-TG 1138385 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||||||||||| ||| |||| | |||||||| ||||| || ||||| Sbjct 1138384 ATGTTCTATTTTGTTGGTTT-TAGAACCGAAGCCATGATTAAGAGGGACAGCCGGGGCAT 1138326 Query 212 TCAGTATT---CAATTGTCAGAGGTGAAATTCTTGGA 245 || ||||| | | | ||||||||||| |||||| Sbjct 1138325 TC-GTATTGTGCCACT---AGAGGTGAAATACTTGGA 1138293 >seq51888 Length=528 Score = 80.6 bits (88), Expect = 5e-13 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| || || | | || ||||| |||||| | ||||| | | Sbjct 197 TTCTATTTTGTTGGTTTTCAGAACTGAGGCCATAATTAAGAGGGATGCTTGGGGGCATTA 256 Query 215 GTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 ||||| |||| | |||||||||||||||| | ||||| || | | |||| Sbjct 257 GTATT---GTGTCACTAAAGGTGAAATTCTTGGACCAGTGCAAGACGGACCAGAGGGAAA 313 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCA 300 || || |||| |||||||||||||||| Sbjct 314 GCATTTGGCAAGAATGTTTTCATTAATCA 342 >seq4598 Length=43072 Score = 77.0 bits (84), Expect = 6e-12 Identities = 107/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| || || | | || ||||| |||||| | ||||| | Sbjct 19445 TTCTATTTTGTTGGTTTTAAGAACTGAGGCCATAATTAAGAGGGATGCTTGGGGGCTTTC 19386 Query 215 GTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 || || |||| | |||||||||||||||| | ||||| || | | |||| Sbjct 19385 GTTTTG---TGTCTCTAAAGGTGAAATTCTTGGACCAGTGCAAGACGGACCAGAGGGAAA 19329 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCA 300 || || ||||| |||||||||||||||| Sbjct 19328 GCATTTGCCAAGAATGTTTTCATTAATCA 19300 >seq2886 Length=122101 Score = 77.0 bits (84), Expect = 6e-12 Identities = 109/151 (72%), Gaps = 7/151 (5%) Strand=Plus/Plus Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||||| | | || | || || ||||| |||| | | |||| | Sbjct 35006 GGTTCTATTTTGTTGGTTTTTGGAACTGAGGTCATAATTAAGAGGGGTGCTTGGGGCAAT 35065 Query 213 CAGTATTCAATTGTCAG---AGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | |||| ||| || | |||||||||||||| | ||||| || | | || Sbjct 35066 CC-TATT---TTGCCAATAAATGTGAAATTCTTGGACCAGTGCAAGACAGACCAGAGGGA 35121 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| ||||| |||||||||||||||| Sbjct 35122 AAGCGTTTGCCAAGAATGTTTTCATTAATCA 35152 >seq38210 Length=757 Score = 75.2 bits (82), Expect = 2e-11 Identities = 108/151 (72%), Gaps = 10/151 (7%) Strand=Plus/Plus Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||||| || || | || || ||||| |||||| | ||||| | Sbjct 88 GGTTCTATTTTGTTGGTTTTCAGAACTGAGGTCATAATTAAGAGGGATGCTTGGGGGCAT 147 Query 213 CAGTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 |||| |||| | |||||||||||||||| | ||| || | | || Sbjct 148 TCCTATT---GTGTCACTAAAGGTGAAATTCTTGGACCAGTGCAAG----ACCAGAGGGA 200 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||| || ||||| |||||||||||||||| Sbjct 201 AAGCATTTGCCAAGAATGTTTTCATTAATCA 231 >seq5524 Length=25007 Score = 75.2 bits (82), Expect = 2e-11 Identities = 108/151 (72%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||||| || || | || ||||| ||| || | ||||| | Sbjct 6450 GGTTCTATTTTGTTGGTTTTCAGAACTAAGGCCATAATTAAGAGGAATGCTTGGGGGCAT 6391 Query 213 CAGTATTCAATTGTCAG---AGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | |||| ||||| |||||||||||||||| | | | ||| || | | || Sbjct 6390 TAATATTG---TGTCACTAAAGGTGAAATTCTTGGACTGGTGCATGACGGACCAGAGAGA 6334 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||| || ||||| |||||||||||||||| Sbjct 6333 AAGCATTTGCCAAGAATGTTTTCATTAATCA 6303 >seq7077 Length=12119 Score = 73.4 bits (80), Expect = 7e-11 Identities = 107/149 (72%), Gaps = 7/149 (5%) Strand=Plus/Minus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| || || | | || ||||| |||||| | ||||| | Sbjct 5567 TTCTATTTTGTTGGTTTTCAGAACTGAGGCCATAATTAAGAGGGATGCTTGGGGGCATTC 5508 Query 215 GTATTCAATTGTCAG---AGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 ||||| ||||| || |||||||||| || | || ||||| || | | ||| Sbjct 5507 GTATTG---TGTCACTAAAGTTGAAATTCTT-GACTGGTTCAAGACGGACCAGAGGAAAA 5452 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCA 300 || || ||||| |||||||||||||||| Sbjct 5451 GCATTTGCCAAGAATGTTTTCATTAATCA 5423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914201040896