Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq616 141 4e-31 seq1268 107 8e-21 seq1926 104 1e-19 seq86 93.3 2e-16 >seq616 Length=1042186 Score = 141 bits (156), Expect = 4e-31 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 829644 TGTTAGGACCCGAAAGATGGTGAACTATGCCTAAGCAGGGTGAAGCCAGAGGAAACTCTG 829703 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||| | || || ||| ||||||||||| ||||| || ||||||||||||| Sbjct 829704 GTGGAGGTCCCTAGTAGTCCTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGC 829761 >seq1268 Length=460344 Score = 107 bits (118), Expect = 8e-21 Identities = 91/112 (81%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG----AGGC 631 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 79115 AAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGTAGGT 79056 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || | ||| ||| |||||| ||| | ||| ||||||||||||||| Sbjct 79055 CCGTAGTAGCCCTGATGTGTAAATCGGTCGACCAATCTGGGTATAGGGGCGA 79004 >seq1926 Length=254242 Score = 104 bits (114), Expect = 1e-19 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||| || ||||||||||||||||||||| |||| ||||||| |||||||||| ||||| Sbjct 223575 GGAACCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAAAGGAAACTCTAGTGGA 223516 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || ||| || ||| | |||||||| || || | |||||||||| |||| Sbjct 223515 GGTCCGTAGCAGTCCTGACATGCAAATCAGTCTTCTGACCTGGGTATAGGAGCGA 223461 >seq86 Length=3005415 Score = 93.3 bits (102), Expect = 2e-16 Identities = 90/116 (78%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct 1373281 TTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAG------CTCTGGT 1373334 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||| || || ||| ||| ||||||||| || || | | ||||||||||| Sbjct 1373335 GGAGGTCCGTAGTGGTCCTGATGTGCAAATCCGTCATCCGACCTAGGTATAGGGGC 1373390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077658689600