Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3299 250 4e-64 seq15 179 6e-43 seq9 107 3e-21 seq2428 100 5e-19 seq512 96.9 6e-18 seq135 96.9 6e-18 seq2814 89.7 9e-16 seq2817 82.4 1e-13 seq746 78.8 2e-12 >seq3299 Length=95189 Score = 250 bits (276), Expect = 4e-64 Identities = 203/245 (83%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||| |||||||||| ||||||||||||| Sbjct 11855 TACTGAGCAGGATTACCATGGCAACAACACATCATTAGTAGGGTAACACTAACCTGTCTC 11796 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 ||||| ||||||| |||||| ||||||||||| || |||||||||||||||| ||| | Sbjct 11795 ATGACTGTCTAAATCCAGCTAACGTTCCCTATCAGAGGGTGAACAATCCAACACTTGGTG 11736 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||| ||||||||| |||||||||| ||||||||| | ||||||| Sbjct 11735 AATTCTGCTTCACAATGACAGGAAGAGCTGACATCGAAGCATCAAAAAGTGATGTCGCTA 11676 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| || ||| |||||||||||||||||||| ||||| ||||| ||| Sbjct 11675 TGAACGCTTGGCCATCATAAGACAGTTATCCCTGTGGTAACTGTTCTGATACCTCCAGCT 11616 Query 240 TCAAA 244 | ||| Sbjct 11615 TAAAA 11611 >seq15 Length=5087073 Score = 179 bits (198), Expect = 6e-43 Identities = 139/167 (83%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 ||||| |||||||| |||||||||||||||||||||||||||| ||| |||||| || Sbjct 2875403 CTAAAAACAGCTCACATTCCCTATTAGTGGGTGAACAATCCAACACTTGATGAATTCCGC 2875462 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 ||| |||| ||| |||||||||||||||||||| ||| ||||||||||| Sbjct 2875463 TTCACAATGA----------CGATATCGAAGGATCAAAAAGCAATGTCCCTATGAACGCT 2875512 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 2875513 TGGCCACCACAAGCCAGTTATCCCTGTGATAACTTTTCTGACACCTC 2875559 >seq9 Length=5865362 Score = 107 bits (118), Expect = 3e-21 Identities = 133/181 (73%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG-- 176 |||| ||||||| |||||| ||||||| ||||| ||||||||||||||| | || | Sbjct 2505227 GAATACTGCTTCACAATGATATGAAGAGCAGACATTGAAGGATCAAAAAGCCATGTTGAG 2505286 Query 177 ---CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 ||| | | ||| | | |||||||||||| ||||||||||||||||||| ||||| Sbjct 2505287 TTGCTACTACCATTTGTCCACTACAAGCCAGTTACCCCTGTGGTAACTTTTCTGACACCT 2505346 Query 234 CTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || | || | || |||||||| | ||||| ||||||| || ||||| | Sbjct 2505347 CCTGCTT--AACCCAAAAGGTTAAAAGGATCCAGAGGCCCTGCTTTCATAGTCTGTATCC 2505404 Query 294 A 294 | Sbjct 2505405 A 2505405 >seq2428 Length=164361 Score = 100 bits (110), Expect = 5e-19 Identities = 105/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||| ||||||||| || |||||||| ||||||||||||||||||||||| |||| || Sbjct 3786 AAGAATCAAAAAGTGGTGTTGCTATGAATGCTTGGCTGCCACAAGCCAGTTA-CCCTTTG 3844 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 |||||||||||| |||||| || | ||| | || | || |||| ||||| | Sbjct 3845 GTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAAGATCATGAGGCCCTA 3904 Query 276 CTTTCATGGTTTGTATT 292 |||||||| | | |||| Sbjct 3905 CTTTCATGATCTATATT 3921 >seq512 Length=1219614 Score = 96.9 bits (106), Expect = 6e-18 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||||| Sbjct 583313 CGCTATGAACACTTGGCCACCACAAGCCAGTTATCCCTGTGGTAACCTTTCTGACACCTC 583254 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | ||| | || | |||||| | |||| |||||||||| |||||| Sbjct 583253 CTGCTTAAAACCCAAAAGGTCAGAAGGATTGTGAGGCTCTGCTTTCATGGTCTGTATT 583196 >seq135 Length=2585190 Score = 96.9 bits (106), Expect = 6e-18 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct 1554833 CTATGAACGCTTGGCTGCCACAAGCCAGTTATGCCTGTGATAACTTTTCTGAAACCTCCT 1554774 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | | | | || | |||||||| ||||| ||||||| | |||||||| Sbjct 1554773 GCTTAACACCCAAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCATTTTCTGTATTCA 1554716 >seq2814 Length=128769 Score = 89.7 bits (98), Expect = 9e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||| ||||||||| | ||| ||| ||| | |||||||||||||||||||||||||||| Sbjct 55091 AAGAATCAAAAAGTGATGTCACTACGAATGTGTGGCTGCCACAAGCCAGTTATCCCTGTG 55150 Query 216 GTAACTTTTCTGGCACCTC 234 ||||||||||| ||||| Sbjct 55151 ATAACTTTTCTGATACCTC 55169 >seq2817 Length=128539 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||||||| || |||| ||| || |||||||||||| ||||||||||||||||||| Sbjct 119820 ATCAAAAAGTTGTGTTGCTACGAATGCATGGCTGCCACAAACCAGTTATCCCTGTGGTAA 119879 Query 220 CTTTTCTG 227 |||||||| Sbjct 119880 CTTTTCTG 119887 >seq746 Length=859735 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| Sbjct 836257 TATTAGTGGGTGAACAATCCACAGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCC 836316 Query 149 GACATCGAAGG 159 | ||| |||| Sbjct 836317 AATATCAAAGG 836327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853467405312