Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2291 320 5e-85 seq61 293 8e-77 seq5522 271 2e-70 seq1643 152 2e-34 seq963 145 2e-32 seq588 140 1e-30 seq5678 109 2e-21 seq512 98.7 3e-18 seq678 95.1 4e-17 seq15 89.7 2e-15 seq202 75.2 4e-11 >seq2291 Length=183962 Score = 320 bits (354), Expect = 5e-85 Identities = 239/279 (86%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | ||||||||||||| |||| Sbjct 84989 CTCCCACTTATTCTACACCTCTCAGGTCTCTTCACTGTGCCAGACTAGAGTCAAGTTCAA 84930 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||||||| |||||||| ||||||| ||||||| |||| ||||| ||||| Sbjct 84929 CAAGGTCTTCTTTCCCCACTGATTCCTCCAAGCCTGTTCCCTCAGCTGAGGTTTTGCTAG 84870 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| || ||||||| ||||||| || || |||||||| || |||||||||||||| Sbjct 84869 ATAGTAGGCAGAGACAGTGAGAATCTCATTTATACATTCATGTGCATCACTAATTAGATG 84810 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | || | ||||||||||||||||||||||| ||||||| ||||| ||||||| | || Sbjct 84809 ATGAAGTATTTGGCTACCTTAAGAGAGTCACAGTTACTTCCGCCATTTACCCACAATTCA 84750 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 ||||||| |||||| ||||||||||||||||| |||||| Sbjct 84749 TTGAATTACTTCAC-TTGACATTCAGAGCACTAGGCAGA 84712 >seq61 Length=3400515 Score = 293 bits (324), Expect = 8e-77 Identities = 194/215 (90%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||||||||||||||||| || ||||| | ||||| |||||||||| Sbjct 1070980 GGCTCCCACTTATTCTACACCTCTCATGTTTCTTCACCGTGCTAGACTATAGTCAAGCTC 1070921 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1070920 AACAGGGTCTTCTTTCCCCACTGATTCCTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1070861 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||| |||||||||||||||| ||||| |||||||||| | ||||||||||||| Sbjct 1070860 GGATAGTAGGTAGGGACAGTGGGAATTTCGTTCATCCATTCATACAAGTCACTAATTAGA 1070801 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||| |||||||||||||||||||||||||||||| Sbjct 1070800 TGACAAGGCATTTGGCTACCTTAAGAGAGTCATAG 1070766 >seq5522 Length=25024 Score = 271 bits (300), Expect = 2e-70 Identities = 183/205 (89%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||||||||||| | |||||| ||||||||||||||||| | || | Sbjct 5211 CCCGTTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTAGGGACAGTGGGAATCACATTCA 5152 Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 ||| ||| || ||||||||||| |||||| || ||||||||||||||||||||||||||| Sbjct 5151 TCCGTTCTTGTGCGTCACTAATAAGATGATGATGCATTTGGCTACCTTAAGAGAGTCATA 5092 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 |||||||| ||| |||||| || ||| |||||||||||||||||||| ||||||||||| Sbjct 5091 GTTACTCCTGCCATTTACCTGCCCTTCATTGAATTTCTTCACTTTGACTTTCAGAGCACT 5032 Query 509 GGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||| |||||||| Sbjct 5031 GGCCAGAAATCACATCACGTCAACA 5007 >seq1643 Length=323083 Score = 152 bits (168), Expect = 2e-34 Identities = 93/99 (94%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| Sbjct 263737 TTAAGAGAGTCATAGTTACTCCCACCGTTTACCCATGCTTCATTGAATTTCTTCACTTTG 263678 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||| ||||||||| Sbjct 263677 ACATTCAGAGCACTGGGCAGAAATCACATGGCGTCAACA 263639 >seq963 Length=670819 Score = 145 bits (160), Expect = 2e-32 Identities = 109/127 (86%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||| | | ||||||||||||||||||||||||||||| ||| || ||| ||||||| Sbjct 218686 ATTAGATAAAGGGGCATTTGGCTACCTTAAGAGAGTCATAGATACCCCTGCCATTTACCC 218627 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||| || |||||||||||||| ||||| |||||||| | ||||||||||||| | Sbjct 218626 GCGCTTCATTACATTTCTTCACTTTGGTATTCA-AGCACTGGACCGAAATCACATTGCTT 218568 Query 529 CAACATC 535 |||| || Sbjct 218567 CAACGTC 218561 >seq588 Length=1077131 Score = 140 bits (154), Expect = 1e-30 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 |||||||||| ||| || ||||| | | |||||||||||||||||||||||||||| Sbjct 6009 TTCTACACCTGTCATATCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC 5950 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 5949 TTTCCCTGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 5905 Score = 120 bits (132), Expect = 1e-24 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 445 CATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 ||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| Sbjct 5902 CATAGTTTCTCCCGCCATTTACCTGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAG 5843 Query 505 CACTGGGCAGAAATCACATTGCGTCAACA 533 ||||| ||| ||||||||| || |||||| Sbjct 5842 CACTGCGCACAAATCACATGGCATCAACA 5814 >seq5678 Length=22815 Score = 109 bits (120), Expect = 2e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 || ||||||||||||||||||||||| | |||||| || |||||||||||||| | || | Sbjct 22728 CCTGTTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGGTATGGACAGTGGGAATCACATTCA 22787 Query 389 TCCATTCATGCGCGTCACTAATTAGATG 416 ||| ||| |||||||||||||| ||||| Sbjct 22788 TCCGTTCTTGCGCGTCACTAATAAGATG 22815 >seq512 Length=1219614 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 12 GCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTA 71 |||| || |||| ||||||| |||| |||| ||||||||||||||| ||| |||| Sbjct 583150 GCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCATTACCGTTTG 583091 Query 72 ACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||| || ||||| ||||||||||||||| || |||| Sbjct 583090 ACAGATGTACCATCCCAGTCAAACTCCCCACCTGGCACTGTC 583049 >seq678 Length=927465 Score = 95.1 bits (104), Expect = 4e-17 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 16672 CGTTTACCCTTGCTTCATTGAATTTCTTCACTCTGACATTCAGAGCACTGGGCAGAAATC 16731 Query 520 ACATTGCGTCAACA 533 ||| | ||||||| Sbjct 16732 ACA--GAGTCAACA 16743 Score = 87.8 bits (96), Expect = 6e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||||||| |||||||||||| |||| || |||||||||||||||||| ||| |||| Sbjct 16598 TTCCCTTGGGTGTGGTTTCGCTGGATAACAGGTAGGGACAGTGGGAATCTAGTTCGTCCA 16657 Query 393 TTCATGCGCGT 403 ||||||| ||| Sbjct 16658 TTCATGCTCGT 16668 >seq15 Length=5087073 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| |||||||| |||||| || Sbjct 2875642 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTGGCCTTAGGATACCTGCATTGCC 2875701 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || | |||| ||| || |||||| ||||||||||||||| || |||| Sbjct 2875702 GTGTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTC 2875748 >seq202 Length=2132747 Score = 75.2 bits (82), Expect = 4e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||||||||||||||||||||||||||||||||||||||||| Sbjct 451337 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 451377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633415146496