Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cricetulus_20griseus_20[refseq_20GCF_5F000223135.1_202011-08-23] 109,152 sequences; 2,399,786,748 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq474 102 6e-17 seq1179 87.8 1e-12 >seq474 Length=1313924 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| || |||||||| || | ||||| || |||||||| ||||| || | Sbjct 1057250 TGGAGCGTTTTAGTCAAGAGGTGCAGGTCCCAGAGGCTCGATGTTTCTATGGCTTTCAAA 1057191 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| ||||| || |||||||||||||||||| | || || ||||| |||||||| | Sbjct 1057190 TTCTCATCGAGAACGTTCACTCGGAGATGTACAGTTTGCTAATAGATACTTACATCAGAG 1057131 Query 61376 A 61376 | Sbjct 1057130 A 1057130 >seq1179 Length=509559 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| || || |||||||||| || ||||| || || || | Sbjct 471847 CATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGTTCTTCCTT 471788 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| ||||| |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 471787 TCCTGTG-TTTTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 471729 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 471728 AAATAGCAAA 471719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039119265280