Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq63698 145 3e-32 seq56166 145 3e-32 seq18288 145 3e-32 seq16752 145 3e-32 seq16751 145 3e-32 seq16745 145 3e-32 seq16700 145 3e-32 seq61850 143 1e-31 seq57336 140 1e-30 seq16756 140 1e-30 seq16750 140 1e-30 seq62715 138 5e-30 seq60486 136 2e-29 seq18289 127 9e-27 seq16754 127 9e-27 seq18287 118 4e-24 seq16749 95.1 5e-17 >seq63698 Length=875 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 122 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 181 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 182 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 236 >seq56166 Length=1068 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 110 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 169 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 170 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 224 >seq18288 Length=2655 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 2279 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 2220 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2219 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2165 >seq16752 Length=2016 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1604 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1545 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1544 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1490 >seq16751 Length=2011 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1902 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1843 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1842 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1788 >seq16745 Length=5257 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 4371 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 4312 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 4311 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 4257 >seq16700 Length=1852 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1351 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1410 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1411 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1465 >seq61850 Length=1158 Score = 143 bits (158), Expect = 1e-31 Identities = 102/116 (88%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1089 GGACCCGAAAGATGGTGAACTATGCCTGGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGG 1030 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1029 AGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 974 >seq57336 Length=1427 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| Sbjct 567 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGTAGCCAGAGGAAACTCTGGTGGA 626 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 627 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 681 >seq16756 Length=1495 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 503 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 444 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || || ||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 443 GGTCCGTAGTGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 389 >seq16750 Length=1463 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| Sbjct 1360 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTTTGGTGGA 1301 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1300 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1246 >seq62715 Length=1095 Score = 138 bits (152), Expect = 5e-30 Identities = 101/116 (87%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| Sbjct 205 GGACCCGAAAGATGGTGAACTATGCATGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 264 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT-CAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| |||| | | |||||||||||||||| Sbjct 265 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTTGGGTATAGGGGCGA 320 >seq60486 Length=1243 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||| Sbjct 103 GGACCCGAAAGATGGTGAACTATGCCTGGACAGGGCGAAGCCAGAGGATACTCTGGTGGA 162 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||| | ||| ||||||||||| ||||| | |||||||||| |||| Sbjct 163 GGTCCGTAGCGATCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGTGCGA 217 >seq18289 Length=15530 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 984 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 925 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 924 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 865 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 864 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 825 >seq16754 Length=2053 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1089 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1030 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 1029 ACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 970 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 969 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 930 >seq18287 Length=1595 Score = 118 bits (130), Expect = 4e-24 Identities = 96/115 (83%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||| | | | ||||||||| |||| |||||||||||||||||||||||| Sbjct 1393 GGACCCGAAAGTTCATCA-CTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1335 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1334 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1280 >seq16749 Length=1168 Score = 95.1 bits (104), Expect = 5e-17 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 |||||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 1168 AGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGA 1109 Query 667 TTTGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 1108 CCTGGGTATAGGGGCGA 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078601610150