Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq18385 197 3e-48 seq18308 197 3e-48 seq18290 197 3e-48 seq18289 197 3e-48 seq17656 197 3e-48 >seq18385 Length=30820 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1143 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1086 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1085 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1026 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1025 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 966 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 965 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 906 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 905 AAGTCCCTGCCCTTTGTA 888 >seq18308 Length=17538 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1213 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1156 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1155 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1096 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1095 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1036 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 1035 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 976 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 975 AAGTCCCTGCCCTTTGTA 958 >seq18290 Length=11481 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 963 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 906 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 905 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 846 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 845 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 786 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 785 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 726 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 725 AAGTCCCTGCCCTTTGTA 708 >seq18289 Length=15530 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4132 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4075 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 4074 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 4015 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 4014 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 3955 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 3954 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 3895 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3894 AAGTCCCTGCCCTTTGTA 3877 >seq17656 Length=198512 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1810 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1753 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 1752 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 1693 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1692 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1633 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 1632 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 1573 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1572 AAGTCCCTGCCCTTTGTA 1555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946582491904