Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 3e-14 seq17 89.7 4e-13 >seq20 Length=25211774 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 |||| || ||| || || || || ||||| | || || || |||||||| ||||||||| Sbjct 21310888 TGGAGCGATTTAGC-CAAGAAGTACAAGTTACTGAAGCCCGCTGTTTCTATGGCTTCCAG 21310830 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||||||| || | || || |||||||||||| | || || || |||||||||| Sbjct 21310829 ATTGCCATGGAAAACATACATTCCGAGATGTACAGTCTCCTGATTGACACGTACATCA 21310772 >seq17 Length=26966924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || ||||||| || |||||||| ||||| || ||| || |||||| Sbjct 9447918 CAGGAGGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTAATCGAGAAT 9447977 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || || ||||| || Sbjct 9447978 GTTCACTCTGAGATGTACAGTTTGCTAATAGACACTTATATCAGAGA 9448024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397252116445520