Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq20 93.3 3e-14
seq17 89.7 4e-13
>seq20
Length=25211774
Score = 93.3 bits (102), Expect = 3e-14
Identities = 93/118 (79%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 61256 TGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314
|||| || ||| || || || || ||||| | || || || |||||||| |||||||||
Sbjct 21310888 TGGAGCGATTTAGC-CAAGAAGTACAAGTTACTGAAGCCCGCTGTTTCTATGGCTTCCAG 21310830
Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
||||||||||| || | || || |||||||||||| | || || || ||||||||||
Sbjct 21310829 ATTGCCATGGAAAACATACATTCCGAGATGTACAGTCTCCTGATTGACACGTACATCA 21310772
>seq17
Length=26966924
Score = 89.7 bits (98), Expect = 4e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|||||||| || || ||||||| || |||||||| ||||| || ||| || ||||||
Sbjct 9447918 CAGGAGGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTAATCGAGAAT 9447977
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || || ||||| ||
Sbjct 9447978 GTTCACTCTGAGATGTACAGTTTGCTAATAGACACTTATATCAGAGA 9448024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397252116445520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |