Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq86 86.0 3e-11 >seq86 Length=7421488 Score = 86.0 bits (94), Expect = 3e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||| |||| | ||||| ||||||||| | |||| ||| || || || ||||||||| Sbjct 6065028 ATCTCTTTGATCCGGGGCACGCCCAGGGTGATGTTCATGGAGGCTACACCTGCAAAGTGG 6065087 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 || |||| ||||||| ||| ||| |||||||| |||| |||| Sbjct 6065088 AAAGTCTTCAGGGTCATCTGGGTGCCTGGCTCGCCAATGCTCTGG 6065132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2082955375965014