Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1607 122 4e-25 seq1993 116 2e-23 seq7771 89.7 2e-15 seq861 89.7 2e-15 seq1970 82.4 3e-13 >seq1607 Length=500845 Score = 122 bits (134), Expect = 4e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| | Sbjct 392265 GGACCCGAAAGGTGGTGAACTATGCCTGGGCAGGACGAAGCCAGAGGAAACTCTGGTGCA 392324 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | || ||| ||| | ||||||||| ||||| || ||||||| ||||||| Sbjct 392325 GGCCCCTAGTGGTCCTGACATGCAAATCGGTCGTCCAACCTGGGTATTGGGGCGA 392379 >seq1993 Length=194958 Score = 116 bits (128), Expect = 2e-23 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||| |||| ||||||||||||||||| | || |||||||||||||||||||| Sbjct 15821 GTTAGGACCCTAAAGGTGGTGAACTATGCCTGAGCAAGGCGAAGCCAGAGGAAACTCTGG 15762 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||||| || ||| |||||||||| | || | ||| || |||||||| Sbjct 15761 TGGAGGTCCGCAGCAGTCCTGACGTGCAAATCTGGCATCCGACCTGGATAGAGGGGCGA 15703 >seq7771 Length=107181 Score = 89.7 bits (98), Expect = 2e-15 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG-GCT-CGCAG 637 ||||| ||||| ||||| |||| |||||||||||||||||||||||| | | | || Sbjct 51318 ATGGTCAACTAGGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGAGATCCATAG 51377 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | | |||||||||| ||||| || ||||||||||||||| Sbjct 51378 CGGCCCGGACGTGCAAATCAGTCGTCGAACCTGGGTATAGGGGCGA 51423 >seq861 Length=573511 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||||| ||| || ||| |||| |||| ||||||||| | | || ||||||||| Sbjct 467911 GAGCATAGGCGTTAGGGCCCAAAAGCTGGTAAACTATGCCAGGGCACGGCCAAGCCAGAG 467970 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||| | || ||| ||| | |||||| | || || || |||||| Sbjct 467971 TAAACTCTGGTGGAGGTCCATAGTGGTCCTGACATGCAAACTGGTCTTCCAACCTGGGTA 468030 Query 675 TAGGGGCGA 683 | |||| || Sbjct 468031 TCGGGGTGA 468039 >seq1970 Length=296582 Score = 82.4 bits (90), Expect = 3e-13 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCT--GAAT--AGGGTGAAGCCAGAGGAAACT 620 ||| |||||||||||||||||||||||||| | | |||| |||||||||||||||| Sbjct 241863 GTTAGGACCCGAAAGATGGTGAACTATGCCATGGCAGGCAGGGCGAAGCCAGAGGAAACT 241922 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||| || | || ||| | | | ||||||| | || | |||| |||||| Sbjct 241923 CTGGTGGCGGTCCTTAGAGGTCCAGACATGCAAATTTGTTATCTGACCTGGGGATAGGGA 241982 Query 681 CGA 683 ||| Sbjct 241983 CGA 241985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078746826650