Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6774 179 1e-42 seq15934 114 4e-23 seq441 96.9 1e-17 seq377 93.3 1e-16 >seq6774 Length=101448 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 26451 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 26510 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 26511 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 26570 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 26571 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 26615 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 30468 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 30527 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 30528 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 30587 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 30588 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 30632 >seq15934 Length=20238 Score = 114 bits (126), Expect = 4e-23 Identities = 82/93 (88%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471 |||||||||||||||||||||||||||||| || | |||||||||||| |||||| Sbjct 14220 ATTTAATGAGCCATTCGCAGTTTCACTGTACCGACCGTGCGTACTTAGACATGTATGGCT 14279 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| ||||||| || Sbjct 14280 TAATCTTTGAGACAAGCATATG-CTACTGGAAG 14311 >seq441 Length=1130880 Score = 96.9 bits (106), Expect = 1e-17 Identities = 83/101 (82%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| |||| |||||||||||| | | |||||||||||||| | | ||| | Sbjct 800363 CAAAGGAACCATAATTGATTTAATGAGTCTTGTGCAGTTTCACTGTACTGGTCATGC--A 800306 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||||||| ||||||||||||||||||||||||| | |||| Sbjct 800305 TACTTAGATATGCATGGCTTAATCTTTGAGACAAACGTATG 800265 >seq377 Length=693323 Score = 93.3 bits (102), Expect = 1e-16 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||| |||||||| | || | |||||| |||| || | ||| | |||||||||||| Sbjct 574701 CATTTCAATTACAGGGCCTCTAAAGAGTCCTGGATTGTTGTTTTTCATCACTACCTCCCA 574760 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 | ||| ||| |||||||||||| ||||||||||||||||||| || Sbjct 574761 GGGTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGAAGT 574806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509517579008