Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9705 116 3e-21 seq3167 105 5e-18 seq137 98.7 8e-16 >seq9705 Length=66704 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 ggTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| |||||||||| ||||| || Sbjct 20439 GGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 20380 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 20379 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 20320 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 20319 TGACTCAATGATGGCATACCAAAG 20296 Score = 93.3 bits (102), Expect = 3e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| ||||| |||||||||| || ||||| ||||| || | Sbjct 18657 CATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGCTGCTCTTCCTT 18598 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 18597 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 18539 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 18538 AAATAGCAAA 18529 >seq3167 Length=233518 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| || |||||||| || | ||||| || |||||||| ||||| || | Sbjct 40493 TGGAACGGTTCAGTCAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 40552 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||||||||| |||||||||||| | || || || || |||||| ||| Sbjct 40553 TTCTCATTGAGAATGTCCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCCGGG 40612 Query 61376 A 61376 | Sbjct 40613 A 40613 >seq137 Length=869495 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| ||||| || || ||||| | || |||||||| || | | Sbjct 369359 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTTTTTCCCATCGAATACCATG 369300 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || || ||||||||||||| |||||||| || Sbjct 369299 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACC 369240 Query 61145 TGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 | ||||| || || | |||||| |||| | | || || |||||| || Sbjct 369239 TCTCCAAGGATATTCAACACTGGGAAGCGCTGA-AACCCGACGAGAGACATTTTATATCT 369181 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || || |||| |||||||| || || || || |||||||| ||| Sbjct 369180 CACGTCCTGGCTTTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAAT 369133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397284919532720