Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq113601 150 3e-34 seq205977 116 7e-24 >seq113601 Length=6001 Score = 150 bits (166), Expect = 3e-34 Identities = 182/243 (75%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||||| |||||||||||||| ||||||||| ||| || | ||||| ||| Sbjct 5040 TTTACTTT-AAAAAATTAGAGTGCTCAAAGCAGACCTGAGCCACCTGGATACAACAGCTA 5098 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| |||||||| | ||||||||||||||||||||| |||||| | | ||||| Sbjct 5099 GGAATAATGGAATAGGATG-GCGGTTCTATTTTGTTGGTTTTTAGGACTGAGGCCATGAT 5157 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| |||||| | | |||| | ||||| | |||||||||||||||| | Sbjct 5158 TAAGAGGGATGGCCAGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGAACCAGC 5217 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| || | | ||||| ||| ||||| |||||||||||||||| ||| |||| Sbjct 5218 ACAAGATGGACCAGAGTGAAAGTGTTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAA 5276 Query 311 GTT 313 ||| Sbjct 5277 GTT 5279 >seq205977 Length=1669 Score = 116 bits (128), Expect = 7e-24 Identities = 125/162 (77%), Gaps = 5/162 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 1458 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 1399 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 1398 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 1340 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 ||||||||||||||||| | |||| | |||||||| || Sbjct 1339 TTCTATTTTGTTGGTTTTCGGAACCGAGGCCATGATTAAGAG 1298 Score = 107 bits (118), Expect = 3e-21 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 ||||||| ||||||||||||||||||||| | |||| | |||||||| ||||| Sbjct 1245 ATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACCGAGGCCATGATTAAGAGGGACG 1187 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 | |||||| | ||||| | |||||||||||||||||| ||||| || Sbjct 1186 GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC 1127 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1126 CAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911992590080