Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq23833 149 3e-33 seq242644 140 1e-30 seq207837 140 1e-30 seq231339 122 4e-25 seq153584 120 1e-24 seq14636 120 1e-24 seq72426 116 2e-23 seq234483 107 8e-21 seq347056 80.6 1e-12 seq92434 80.6 1e-12 >seq23833 Length=24817 Score = 149 bits (164), Expect = 3e-33 Identities = 104/117 (89%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 129 GTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 188 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| || |||||||||| ||||||||||| ||||| || ||||||||||||| Sbjct 189 TGGAGGTCCGTAGCGGTTCTGACGTGCAAATCG-TCGTCCAACCTGGGTATAGGGGC 244 >seq242644 Length=798 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| | | ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 157 GAGCACGAGCGCATCCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 98 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | |||||| ||| |||| |||||| ||||| | Sbjct 97 CCAGAGGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGACGTGGAAATCGGTCGTCCGACC 38 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 37 TGGGTATAGGGGCGA 23 >seq207837 Length=1616 Score = 140 bits (154), Expect = 1e-30 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| | | ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 1531 GAGCACGAGCGCATCCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 1472 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | |||||| ||| |||| |||||| ||||| | Sbjct 1471 CCAGAGGAAACTCTGGTGGAGGTCTGTAGCGGTCCTGACGTGGAAATCGGTCGTCCGACC 1412 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 1411 TGGGTATAGGGGCGA 1397 >seq231339 Length=1025 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 695 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 754 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 755 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 814 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 815 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 854 >seq153584 Length=3707 Score = 120 bits (132), Expect = 1e-24 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||||| ||| |||||| |||| |||| ||||||||| | ||||||||||||||| Sbjct 1577 GAGCATAGGCGTTAGGACCCAAAAGCTGGTAAACTATGCCAGGGCAGGGTGAAGCCAGAG 1636 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| || || ||| ||| | ||||||| | || || || |||||| Sbjct 1637 GAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACATGCAAATTGGTCTTCCAACCTGGGTA 1696 Query 675 TAGGGGCGA 683 | |||| || Sbjct 1697 TCGGGGTGA 1705 >seq14636 Length=23988 Score = 120 bits (132), Expect = 1e-24 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||||||||||||||||| || | ||||||||||||||||||||||||| || |||| Sbjct 1197 ATGGTGAACTATGCCTGGGCAGTGCAAAGCCAGAGGAAACTCTGGTGGAGGTTCATAGCG 1138 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| ||||||||||| ||||| || ||||||||||||||| Sbjct 1137 GTCCTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGCGA 1094 >seq72426 Length=9623 Score = 116 bits (128), Expect = 2e-23 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 9530 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 9471 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 9470 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 9411 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||||| || || ||||||| ||| | ||| Sbjct 9410 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGG 9377 >seq234483 Length=965 Score = 107 bits (118), Expect = 8e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||| |||||||||||||||| |||| |||||||||||||||||| Sbjct 422 TGTTAGGACCCAAAAGGTGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 363 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 ||||||| || || ||| ||| | ||||||||| || || || |||| Sbjct 362 GTGGAGGTCCGTAGTGGTCCTGACATGCAAATCGGTCTTCCAACCTGGG 314 >seq347056 Length=201 Score = 80.6 bits (88), Expect = 1e-12 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||||||||||||||||||||||||||| || || ||| ||| | || |||| | | Sbjct 198 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGTGGTCCTGACATGTAAATTGGT 139 Query 660 CGTCAAATTTGGGTATAGGGGCGA 683 | || || ||||||| |||| || Sbjct 138 CTTCCAACCTGGGTATCGGGGTGA 115 >seq92434 Length=7627 Score = 80.6 bits (88), Expect = 1e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||| Sbjct 52 GGACCCGAAAGATGGTGAACTCTGCCTGGCCAGGGCGAAGCCAGAGGAAGCTCTGGTGGT 111 Query 629 GG 630 || Sbjct 112 GG 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2072482633000