Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq231339 167 1e-39 seq72426 129 3e-28 seq246712 95.1 6e-18 seq132897 87.8 8e-16 >seq231339 Length=1025 Score = 167 bits (184), Expect = 1e-39 Identities = 98/102 (96%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GGAAAAGAAACTAACGAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 533 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||| ||||| | |||||||||||||||||||| Sbjct 534 CCGAATCCCCGCCGCGCGGCGCGGCGCGGGACATGTGGCGTA 575 >seq72426 Length=9623 Score = 129 bits (142), Expect = 3e-28 Identities = 91/103 (88%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| Sbjct 9318 GGAAAAGAAACTAACGAGGATTCCCTCAGTAATGGCGAGTGTACAGGGAAGAGCCCAGCG 9259 Query 61 -CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||||||| || | || | ||||| ||| |||||||||| Sbjct 9258 CCCGAATCCCCACCGGGTGGCGTGGCGCAGGAAATGTGGCGTA 9216 >seq246712 Length=720 Score = 95.1 bits (104), Expect = 6e-18 Identities = 69/80 (86%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 2 GAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCC----CA 57 |||||||||||||| || |||||||||||||| | ||||||||||||||||||| || Sbjct 584 GAAAAGAAACTAACTAGTATTCCCTCAGTAACAGTGAGTGAACAGGGAAGAGCCCAGTCA 525 Query 58 GCGCCGAATCCCCGCCCCGC 77 | ||| |||||||||| ||| Sbjct 524 GTGCCAAATCCCCGCCACGC 505 >seq132897 Length=4791 Score = 87.8 bits (96), Expect = 8e-16 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 AAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGA 64 |||||||||| ||||||||||||||||| | ||||||||||||| |||||||| ||| | Sbjct 1166 AAGAAACTAATCAGGATTCCCTCAGTAATGCTGAGTGAACAGGGAGGAGCCCAGTGCCCA 1225 Query 65 ATCCCCGC 72 ||||| || Sbjct 1226 ATCCCTGC 1233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229643006400