Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq205977 217 2e-54 seq84824 149 1e-33 seq29836 80.6 4e-13 seq8846 78.8 1e-12 >seq205977 Length=1669 Score = 217 bits (240), Expect = 2e-54 Identities = 193/236 (82%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 575 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 633 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 634 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 692 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 693 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 752 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 753 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAG 808 >seq84824 Length=8321 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| |||||||||||||||||||||| ||||| |||||||| Sbjct 7018 CTAGTTAGCATGCCAGAGTCTCATTCGTTATCGGAATTAACCAGAAAAATCGCTCCACCA 7077 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct 7078 ACTAAGAACAGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCTATCTGTC 7134 >seq29836 Length=17299 Score = 80.6 bits (88), Expect = 4e-13 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | ||| ||| | ||||||||||||||||||| |||||||||| || Sbjct 17054 GTCAGTGTAGCATACCTGCAACCCTGGACATCTAAGGGCATCACAGGCCTGTTATTG-CT 16996 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | || || || ||| | |||| | |||||||||||||| Sbjct 16995 C-AATATCAGGTGACTGAATGCCACTTGTCCCTCTAAGAAG 16956 >seq8846 Length=29111 Score = 78.8 bits (86), Expect = 1e-12 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||| ||| ||||||||||||||| || |||| ||| ||||||| ||||||| Sbjct 5650 TCTCATTCATTAGTGGAATTAACCAGACAGATTGCTCCGCCAGCTAAGAATAGCCATGCG 5591 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 | ||| ||||||| ||||||||||||| ||||| Sbjct 5590 TC-CCA-CCATAGAGATGAGAAAGAGCTATCGATCTG 5556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794094799260