Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq145936 282 7e-74 seq126147 199 7e-49 seq121797 125 1e-26 >seq145936 Length=4971 Score = 282 bits (312), Expect = 7e-74 Identities = 219/262 (84%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1910 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCTAGCTCACGTTCCCTA 1969 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||||| || |||||||||||| ||||||||||||||||| Sbjct 1970 TTAGTGGGTGAACAATCCAACGTTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 2029 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||||||||||| ||||||||||||| ||||||| |||||||| || Sbjct 2030 CATGGAAGGATCAAAAAGCGACGTCGCTATGAATGCTTGGCCGCCACAAG--------CC 2081 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 || |||||||||||||| |||||| || | ||| | || | |||||||| ||| Sbjct 2082 CTTTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGG 2141 Query 271 CCACACTTTCATGGTTTGTATT 292 || | | ||||||| |||||| Sbjct 2142 CCCCTATATCATGGTCTGTATT 2163 Score = 277 bits (306), Expect = 3e-72 Identities = 204/235 (87%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||| |||||||||||||||||| Sbjct 1633 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGAGTAAAACTAACCTGTCTC 1692 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| |||||||||||||||| |||||| ||||||||| | Sbjct 1693 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGCGAACAACCCAACGCTTGGTG 1752 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||| | ||||||| | ||||||||| ||||||||| Sbjct 1753 AATTCTGCTTCACAATGATAGGAAGAGCTG-CATCGAATGCTCAAAAAGCGACGTCGCTA 1811 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| |||||||||| |||||||| ||||||||||||||| |||||| Sbjct 1812 TGAACGCTTGGCCGCCACAAGCCTGTTATCCCCGTGGTAACTTTTCTGACACCTC 1866 >seq126147 Length=5190 Score = 199 bits (220), Expect = 7e-49 Identities = 142/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 ||| ||||||||||||||||||||||| | ||||||| | |||| |||||||||||||| Sbjct 2000 GTAAGGTAAAACTAACCTGTCTCATGAAGATCTAAACACTGCTCGTGTTCCCTATTAGTG 1941 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||| ||| |||||||||||| | |||||||||||| |||||| | Sbjct 1940 GGTGAACAATCCAACTCTTGGTGAATTCTGCTTCACAACGATAGGAAGAGCTGACATCTA 1881 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 ||||||||||||||| |||||||||||| |||||| |||||| Sbjct 1880 AGGATCAAAAAGCAATGTCGCTATGAACACTTGGCCACCACAA 1838 >seq121797 Length=5458 Score = 125 bits (138), Expect = 1e-26 Identities = 83/92 (90%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3938 GTCTAAACCCAGATCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCT 3997 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||| |||||||||||| |||||||| || Sbjct 3998 GCTTCACAATGATAGGAAGAACCGACATCAAA 4029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851405669760