Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq205977 82.4 9e-14 seq113601 73.4 5e-11 >seq205977 Length=1669 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 1323 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 1381 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 1382 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1422 >seq113601 Length=6001 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||| ||||||||||||||| ||| | |||||||| |||||||| ||| ||||| | Sbjct 5142 CTAAAAACCAACAAAATAGAACCGC-CATCCTATTCCATTATTCCTAGCTGTTGTATCCA 5084 Query 66 GGCGT---AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 || | | | ||||||||| |||||||||||| | || ||||| Sbjct 5083 GGTGGCTCAGGTCTGCTTTGAGCACTCTAATTTT-TTAAAGTAAA 5040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593179247640