Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq113601 95.1 1e-17 seq205977 87.8 2e-15 >seq113601 Length=6001 Score = 95.1 bits (104), Expect = 1e-17 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCAT 69 |||||||| |||||||||||| | ||||||||| ||| || | ||||| | | Sbjct 5040 TTTACTTT-AAAAAATTAGAGTGCTCAAAGCAGACCTGAGCCACCTGGATACAACAGCTA 5098 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| |||||||| | ||||||||||||||| ||||| |||||| | | |||| Sbjct 5099 GGAATAATGGAATAGGATG-GCGGTTCTATTTTGTTGGTTTTTAGGACTG-AGGCCATGA 5156 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 | || | |||| | | |||| | ||||| | | |||||||||||||| Sbjct 5157 TTAAGAGGGATGGCCAGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTG 5210 >seq205977 Length=1669 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 1422 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 1363 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| ||||||||||||||| ||||| Sbjct 1362 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510261718400