Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq233516 316 7e-84 >seq233516 Length=983 Score = 316 bits (350), Expect = 7e-84 Identities = 341/445 (77%), Gaps = 5/445 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| |||| ||||||| || ||| ||| || ||||| || | | |||| | Sbjct 541 TCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAAC-GATTTC 599 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | ||||||||||||| ||| ||||| | ||||||||| Sbjct 600 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCA 658 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATC-ATGGGCCAAGGTTAGATATCC 178 || ||||||||||||| ||| |||| |||| ||| | ||| | |||||| ||| Sbjct 659 GTCAAACTACCCACCATACACGGTCCTGGACCCGGATATACGGGTCGCAGTTAGACATCT 718 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| | || |||||||||||| | |||||||| ||| |||| || ||| | Sbjct 719 ATGACGATAAGGGTGGTATTTCAAGGATGACTCCACCTGAACTGGCGTCCAGGCTTCAAA 778 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||| |||||||||||||||| ||| | ||||||| | |||||||||| ||||| Sbjct 779 GTCTACCACCTATCCTACACATGTCGCCACAAATGCCAGTGTAAAGCTATAGTAAAGGTG 838 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 839 CACGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCAC 898 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | ||| | | |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 899 TGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 958 Query 418 CCGACAAGGAATTTCGCTACCTTAG 442 ||||||||||||||||||||||||| Sbjct 959 CCGACAAGGAATTTCGCTACCTTAG 983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1696433768960