Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq145936 104 4e-20 seq169764 93.3 7e-17 seq168584 75.2 2e-11 seq63211 75.2 2e-11 >seq145936 Length=4971 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1635 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1578 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1577 GGGGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1524 >seq169764 Length=2981 Score = 93.3 bits (102), Expect = 7e-17 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||||| | |||||| | ||||| | || | || |||| || || | | Sbjct 2981 GAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATCGGG 2924 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2923 CGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2874 >seq168584 Length=3970 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 3797 GCGAAGCTACCATCTGTGGGATTATGACTGAAGGCCTCTAAGTCAGAATCC 3847 >seq63211 Length=10754 Score = 75.2 bits (82), Expect = 2e-11 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 ||||||| || | |||||| | ||||| | || || |||| || || || | | Sbjct 6323 GAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTACTTGGCTGAGGAGCCAATGAGGTG 6380 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 6381 AAGCTACCATCTGGGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 6428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816418749440