Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq75483 196 1e-47 seq3319 134 4e-29 seq84937 109 2e-21 seq214645 95.1 4e-17 seq1252 80.6 8e-13 >seq75483 Length=9272 Score = 196 bits (216), Expect = 1e-47 Identities = 128/140 (91%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | ||||||||||| || ||||| |||||||||||||| Sbjct 9133 CTCATTCCAATTACAGGGCCTCGAAAGAGCCCTGGATTGTTATTTTTTGTCACTACCTCC 9192 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 9193 CCGGGTCGGGAGTGGGTAATTTGCGAGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 9252 Query 123 TCAGGCTCCCTCTCCGGAAT 142 |||||||||||||||||||| Sbjct 9253 TCAGGCTCCCTCTCCGGAAT 9272 >seq3319 Length=39411 Score = 134 bits (148), Expect = 4e-29 Identities = 96/107 (90%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 74 TTGGGT--AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 22199 TTGGGTTTATTTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 22140 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATG 177 ||||| ||||||||||||| ||||||||| || | |||| |||||| Sbjct 22139 CTCTCTGGAATCGAACCCTGATTCCCCGTCACAC-ATGATCACCATG 22094 >seq84937 Length=8307 Score = 109 bits (120), Expect = 2e-21 Identities = 86/101 (85%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| |||| |||||||||||| | || |||||||||||||| | | ||| | Sbjct 491 CAAAGGAACCATAATTGATTTAATGAGTCTTTTGCAGTTTCACTGTACCGGTCATGC--A 434 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||||||||||||||||||||||||||||||||||| |||| Sbjct 433 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCGTATG 393 >seq214645 Length=1422 Score = 95.1 bits (104), Expect = 4e-17 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 60 TCCCCGTG-TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1286 TCCCTGTGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCTG 1345 Query 119 TTTCTCA 125 ||||||| Sbjct 1346 TTTCTCA 1352 >seq1252 Length=55011 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/51 (96%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 35741 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTAGTGGC 35790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505106652160