Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18550 116 3e-21 seq149185 105 5e-18 seq55738 102 6e-17 seq125977 100 2e-16 >seq18550 Length=27441 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| || ||||| || ||||| |||||||||| ||||| || Sbjct 6893 GGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 6952 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 6953 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 7012 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 7013 AGACTCAATGATGGCATACCAAAG 7036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||| ||||| |||||||||| || ||||||||||| || | Sbjct 8757 CATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGTTGCTCTTCCTT 8816 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| || || |||||| ||||||||||||||||| ||||| || ||||||| Sbjct 8817 CCCTGTG-TTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAGGT 8875 Query 66459 AGATGGCGAA 66468 | || || || Sbjct 8876 AAATAGCAAA 8885 >seq149185 Length=4681 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| || |||||||| || | ||||| || |||||||| ||||| || | Sbjct 2129 TGGAACGGTTCAGTCAAGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 2188 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||||||||| |||||||||||| | || || || || |||||| ||| Sbjct 2189 TTCTCATTGAGAATGTCCACTCAGAGATGTACAGTCTACTAATAGACACTTACATCCGGG 2248 Query 61376 A 61376 | Sbjct 2249 A 2249 >seq55738 Length=16555 Score = 102 bits (112), Expect = 6e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| ||||| || || ||||| | || |||||||| || | | Sbjct 6433 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTCTTTCCCATCGAATACCATG 6492 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || || ||||||||||||| |||||||| || Sbjct 6493 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACC 6552 Query 61145 TGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGG-TGAACAACATTTCATTAA 61202 | ||||| || || | |||||| |||| | | | ||| || |||||| || Sbjct 6553 TCTCCAAGGATATTCAACACTGGGAAGCGCTGA--AACCGGACGAGAGACATTTTATATC 6610 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || || |||| |||||||| || || || || |||||||| ||| Sbjct 6611 TCACGTCCTGGCATTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAAT 6659 >seq125977 Length=8618 Score = 100 bits (110), Expect = 2e-16 Identities = 200/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| ||| || || ||| ||||| || ||||| || | || ||||| || || | | Sbjct 4206 ATGAGCCCTTACTGAGAGAAAATCCCCGCCGTTTTGTTGTCTTTCCCATTGAATACCATG 4265 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| |||||||| || || || || ||||||||||| | |||||||| || Sbjct 4266 ATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACTGCTGAGGAGGTGGACC 4325 Query 61145 TGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 | ||||| || || | |||||| ||| | | | || || |||||| || Sbjct 4326 TCTCCAAGGATATTCAACACTGGGAAGCACTGAAACA-CGACGAGAGACATTTTATATCT 4384 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG- 61262 | || |||| |||||||| || || | || |||||||| ||| | | || | Sbjct 4385 TACGTCCTGGCTTTCTTTGCGGCGAGTGATGTCATAGTCAATGAAAATCTGGTAGAGTGC 4444 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 ||| || || || || || || | ||||| || |||||||| |||||||| Sbjct 4445 TTTAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCA 4494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395869895134400