Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq64423 159 5e-37 seq67106 140 5e-31 >seq64423 Length=560 Score = 159 bits (176), Expect = 5e-37 Identities = 179/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | ||||| ||||| ||| |||||| |||||| | Sbjct 485 GTACAAAGGGCAGGGACTTAATCAACACAAGCTT-ATGACCCGCACTTACTGGGAATT-C 428 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| || || Sbjct 427 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACAGGTT 368 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||| | || | ||| |||||||||||| | ||| Sbjct 367 ACCCACACCTGCCGGCGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCACATGCA 308 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 307 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 255 >seq67106 Length=448 Score = 140 bits (154), Expect = 5e-31 Identities = 177/236 (75%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGA--CGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 |||||||||||||||| | || ||||||| ||||| ||||| ||| |||||| |||||| Sbjct 72 GTACAAAGGGCAGGGAGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT 130 Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGA 117 ||||||| | | || ||||||||| | ||| | |||| || ||||| || Sbjct 131 -CCTCGTTCATGGGGAATAATTGCAATCCCCAATCAC-ATCAAGAATGGGGTTCAACAGG 188 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || | ||| |||||||||||| | || Sbjct 189 TTACCCGCGCCTGCCGGCATAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCACATG 248 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 249 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751455591950