Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq64423 217 2e-54 seq67106 185 1e-44 seq73213 120 5e-25 seq71630 120 5e-25 seq70001 82.4 1e-13 seq72963 75.2 2e-11 >seq64423 Length=560 Score = 217 bits (240), Expect = 2e-54 Identities = 205/256 (80%), Gaps = 18/256 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 327 GTCAGTGTAGCGCACATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 269 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | ||| | |||||||||||||| | | |||||| Sbjct 268 CAATCT-CAGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGGGGACGCCAACCGC- 211 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTT-CGTTATCGGAATTAAC 182 ||| |||| ||| |||||| | | |||||||| | |||| ||||||||| Sbjct 210 -TCG--GGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCGTTTCATTATTGGAATTAAC 154 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 153 CAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAA 94 Query 243 GAGCTATCAATCTGTC 258 |||||||||||||||| Sbjct 93 GAGCTATCAATCTGTC 78 >seq67106 Length=448 Score = 185 bits (204), Expect = 1e-44 Identities = 178/224 (79%), Gaps = 17/224 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 231 GTCAGTGTAGCGCACATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 289 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 ||| || | |||||| | |||| | |||||||||||||| | | || |||| Sbjct 290 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCAC- 347 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||||||| |||| |||||||||| Sbjct 348 -TCG--GGGGTCACGAAACTAGTTAGCATGCCAGAGTCTCGTTCATTATTGGAATTAACC 404 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 405 AGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACC 448 >seq73213 Length=4198622 Score = 120 bits (132), Expect = 5e-25 Identities = 183/255 (72%), Gaps = 13/255 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| | | || |||| | ||||||||| ||||||| | || || ||| || Sbjct 4108832 GTCAGTGTAGTATGTGAGCAGCCCTGGGCATCTAAGGACATCACACAGCTCTT-TTGGCT 4108774 Query 75 CAAACT-TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || || || |||||| | | || | || ||||||||||| | ||| | || | Sbjct 4108773 CAGTCTCTCGGGTGGCTGAATGACACTTGTTCCTCTAAGAAGTTGGGGTACAATC-TACT 4108715 Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||||| ||| |||||| | | ||||| ||| ||||| |||||||||| Sbjct 4108714 GCTTGGGGTTACATAACTAGTTAGCATGCCATAGTCTCCTTCATTATCAGAATTAACCA- 4108656 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||||| ||||| || ||||| || ||||| ||| |||||||| |||| ||||||| Sbjct 4108655 ACAAATTGCTCCATCAGCTAAGGACAGCCATACACTACCACCCACCAAATCTTGAAAGAG 4108596 Query 246 CTATCAAT-CTGTCC 259 |||||||| |||||| Sbjct 4108595 CTATCAATCCTGTCC 4108581 >seq71630 Length=8079494 Score = 120 bits (132), Expect = 5e-25 Identities = 172/242 (71%), Gaps = 29/242 (12%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| |||||| |||| ||||||| ||| ||||||||| |||||||| Sbjct 1042690 GTCAGTGTAGCGTGCGTGCAGCCCCAGACATCTACGGGTATCACAGACTTGTTATTG--- 1042746 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG---CCACCAACCATA 131 |||||| | |||| | ||| || ||||||| | || || |||| Sbjct 1042747 -----------TGGCTGAATGCCATTTGTCACTATAAGAAGTTGGGGGCCGCCGACCACT 1042795 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | ||| |||||| | | ||||| || |||| || |||||||| |||||| Sbjct 1042796 -TGGGCGTAACTAGTTAGCATGCCAGAGTCTCACTC-TTATTGGGATTAACCACACAAAT 1042853 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||| ||||| ||||||||| ||||| ||| |||||||||||||||||||| Sbjct 1042854 CACTCTACCAA----GAACGGCCAGGCACC------CATGGAATCAAGAAAGAGCTATCA 1042903 Query 252 AT 253 || Sbjct 1042904 AT 1042905 >seq70001 Length=389933 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| | || | || ||||||| ||||| | |||||||||||| ||||| |||| Sbjct 291942 GTTCTTAATAGAAAATAACCAGGCAAATTATCTTACCAACTAAGAATTGCCATCTACCAT 291883 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| || ||| |||||||| ||||||||||||||| Sbjct 291882 CACTCACAGATTCAAGAAAAAGCTATCAATCTGTC 291848 >seq72963 Length=14329585 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||| |||| ||||||||||||||||||| |||||||||||| || |||||||||| || Sbjct 205399 TTCCTTATTGGAATTAACCAGACAAATCCCTCCACCAACTACTAAAGGCCATGCACAAC 205341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796223159130