Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq74511 232 1e-58 seq71411 188 1e-45 seq71422 134 2e-29 >seq74511 Length=2205151 Score = 232 bits (256), Expect = 1e-58 Identities = 173/203 (85%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2104760 CATCAGTAGGGTAAAACTAACCTGT-----GACGGTCTAAACCAAGCTCACGTTCCCTAT 2104706 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 || ||||||||||||||| || |||||||||||| || |||||||| ||||| Sbjct 2104705 CAGCAGGTGAACAATCCAACATTTGGTGAATTCTGCTTCACAGTGCTAGGAAGAACCGAC 2104646 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || |||||||||||| || ||||| || |||| ||||||| |||||||||||||||||| Sbjct 2104645 ATAGAAGGATCAAAAGGCGACGTCACTGTGAAAGCTTGGCCACCACAAGCCAGTTATCCC 2104586 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 ||||||||||||| || |||||| Sbjct 2104585 TGTGGTAACTTTTATGACACCTC 2104563 >seq71411 Length=2981636 Score = 188 bits (208), Expect = 1e-45 Identities = 205/266 (77%), Gaps = 11/266 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCAC-GTTCCCT 89 |||||||||| |||||| |||||||| ||| |||||| ||||||||| ||||||| Sbjct 2894703 TCATCAGTAGAATAAAAC----CTGTCTCACGACCTTCTAAATCCAGCTCACAGTTCCCT 2894648 Query 90 ATTAGTGGGTG-AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||| ||||||||| | || |||||||||||| |||||||||||||| Sbjct 2894647 G--AGTGGGTGGAACAATCCATC--TTGGTGAATTCTGCTTCACAGTGATAGGAAGAGCC 2894592 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 ||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2894591 AACAGAGAAAGATCAAAAAGCAACGTCGCTAGGAACGCTTGGCCACCACAAGCCAGTTAT 2894532 Query 209 CCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATA 268 ||| ||||||| | |||| ||| || | |||| | || | |||||||| | Sbjct 2894531 CCCGGTGGTAATGTCTCTGACACTTCCTGTTAAAAATCCAAAAGGTCAGAAGGATCGTGA 2894472 Query 269 GG-CCACACTTTCATGGTTTGTATTC 293 || || | ||||| || ||||||| Sbjct 2894471 GGTCCCCGCTTTCGCAGTCTGTATTC 2894446 >seq71422 Length=186612 Score = 134 bits (148), Expect = 2e-29 Identities = 100/116 (86%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||| |||| |||||||||| ||||| | Sbjct 5365 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATGGAAGAATCAAAAAGCGACGTCTTT 5424 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||| |||||| |||| | ||||||||||||||||||| ||||| | |||||| Sbjct 5425 ATGAACACTTGGCCACCAC-ATCCAGTTATCCCTGTGGTAATTTTTCCGACACCTC 5479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853761506880