Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq64423 188 1e-45 seq67106 163 5e-38 seq71630 102 2e-19 >seq64423 Length=560 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | |||| || | ||||| |||||||||||||||| Sbjct 229 CTTCTTAGAGGGACAAGTGGTGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 286 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| | ||||||||||||| | || | || | | Sbjct 287 ATGCCCTTAGATGTCCGGGGCTGCATGTGCGCTACACTGACTGGCTCAGTGTGTGCCTAC 346 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| |||| ||||||| || | || | | ||||| ||||||| | | |||| Sbjct 347 CCTACGCCGGCAGGTGTGGGTAACCTGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 406 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 407 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGTGTTGATT 466 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 467 AAGTCCCTGCCCTTTGTA 484 >seq67106 Length=448 Score = 163 bits (180), Expect = 5e-38 Identities = 196/260 (75%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 329 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAATAACAGGTCTGTG 272 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| | ||||||||||||| | || | || | | Sbjct 271 ATGCCCTTAGATGTCCGGGGCTGCATGTGCGCTACACTGACTGGCTCAGTGTGTGCCTAC 212 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| || | || | | || || | | ||| | | |||| Sbjct 211 CCTATGCCGGCAGGCGCGGGTAACCTGTTGAACCCCATTCTTGAT-GTGATTGGGGATTG 153 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 152 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 93 Query 311 ACG--TCCCTGCCCTTTGTA 328 | | ||||||||||||||| Sbjct 92 AAGTCTCCCTGCCCTTTGTA 73 >seq71630 Length=8079494 Score = 102 bits (112), Expect = 2e-19 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||| ||||||||| ||| ||||||| |||| |||||| |||||||||||| | Sbjct 1042746 CAATAACAAGTCTGTGATACCCGTAGATGTCTGGGGCTGCACGCACGCTACACTGACTGG 1042687 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 || | || | | ||| | || ||| ||||| | | || | | || || Sbjct 1042686 CTCAGCATGTGCCTACCCTACACTGGCAGGCACAGGTAACCCATTGAACCCCACTCATGA 1042627 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 |||||| | |||||||||||| | | | || || ||| |||||| || ||||| Sbjct 1042626 TGGGGACCAGGGATTGCAATTATTCCCCATGAATGATAAATTCCTAGT----GCATGTCA 1042571 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||| || | ||||| |||||||||||||||| Sbjct 1042570 TAAGCTTGCATGGATTAAGTCCCTGCCCTTTGTA 1042537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946492157440