Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq71411 264 4e-68 seq73942 91.5 5e-16 seq73695 89.7 2e-15 seq73626 86.0 2e-14 seq74005 77.0 1e-11 >seq71411 Length=2981636 Score = 264 bits (292), Expect = 4e-68 Identities = 238/295 (81%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||| ||||| |||||||||||| ||| ||||| | | ||||| || |||||||||| Sbjct 2894130 TCCCGCTTATCCTACACCTCTCATGTCTCTTCACCGTGCCAGACTACAGCCAAGCTCAAC 2894071 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||| | || Sbjct 2894070 AGGGTCTTCTTTCCCTGCTGATGCCGCCAATCCCGTTCCCCTGGCTGTGGTTTCCGTGGA 2894011 Query 358 TAGTAGATAGGGACAGT-GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||| |||||||||| ||| | ||| | | ||||||| | | ||||||||| |||| Sbjct 2894010 CAGTAGGTAGGGACAGTGGGGCACCTCTGTCACCCATTCAAGTG-GTCACTAATGCGATG 2893952 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||| || || ||| | ||||||||| ||| || | || |||||| || ||| Sbjct 2893951 AGGAGGCTTTGGGGGGCCTCGA-AGAGTCATAATTAGTCGCACCCTTTACCTGCCCTTCA 2893893 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||| ||||| || |||||||| ||||||||||||||||| ||||||| Sbjct 2893892 TTGAATTTCTCCACTTCGATGTTCAGAGCTCTGGGCAGAAATCACATCGCGTCAA 2893838 >seq73942 Length=1720095 Score = 91.5 bits (100), Expect = 5e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129722 TTTTTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 1129670 >seq73695 Length=1566868 Score = 89.7 bits (98), Expect = 2e-15 Identities = 115/158 (73%), Gaps = 12/158 (8%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||| |||| | |||||||||| || | | | | |||||| | |||||| || Sbjct 283922 GAGTCAAGTTCAAGAAGGTCTTCTTTGCCTAGTCACT--GGCAAGCCTG--CCCTTGACT 283867 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 || |||| || || ||||||||||| | ||| || | ||||| ||| | | Sbjct 283866 GTTGTTTAGC--------AGTGAGGGACAGTGGAATTCTAATTCACCCATTTATGTACAT 283815 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 ||| || |||||||| |||||||| |||||| |||||| Sbjct 283814 CACCAAGTAGATGACAAGGCATTTAGCTACCCTAAGAG 283777 Score = 80.6 bits (88), Expect = 9e-13 Identities = 73/92 (79%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 ||||||||||||||||| | ||||| | | |||| |||||| | || || |||| Sbjct 283333 AGAGTCATAGTTACTCCTGAAGTTTATCTGGGCTTCCTTGAATCTGTT-----TGGCATT 283279 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||| || ||||||||||| ||||| Sbjct 283278 CAGAGCACTGGACACAAATCACATTGTGTCAA 283247 >seq73626 Length=12063405 Score = 86.0 bits (94), Expect = 2e-14 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||| ||| ||||||| | | || ||||| | |||| | ||||||||||| | Sbjct 9295949 CTTAAGAAAGTTATAGTTATTTCTACCATTTACTTGTGCTTCATGGAATTTCTTCATGTC 9295890 Query 494 GACATTC-AGAGCACTGGGCAGAAATCACATTGCGTCAACAT-CACTTT 540 ||||||| |||||||||| || |||||||||||| | | ||| |||||| Sbjct 9295889 GACATTCAAGAGCACTGGACAAAAATCACATTGCATAATCATGCACTTT 9295841 >seq74005 Length=10455881 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 98395 TTTCTTCACTTTGACATTCAGAGCACTGGGTAGAAATCACATCCTGTCAACA 98344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633978015040