Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq74511 80.6 4e-13 seq72697 78.8 2e-12 >seq74511 Length=2205151 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 || |||||||||||| | |||||| | ||||| | || | || |||| || || || Sbjct 2104788 TAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTCTGTGCTTGGCTGAGGAGCCAATG 2104845 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||| | ||||| |||||||||| |||||| Sbjct 2104846 GGGCGAAGCTACCATCTGTGGGATTAAGACTGAAGGCCTCTAAGTGGGAATCC 2104898 >seq72697 Length=8563112 Score = 78.8 bits (86), Expect = 2e-12 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 5801598 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 5801539 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||| |||||||||||||||| | | |||| Sbjct 5801538 CTGAATGCCTCTAAGTCAGAATGCCTCCCAG 5801508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818606942720