Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq72249 203 1e-49 seq71766 187 8e-45 seq19071 179 1e-42 seq16796 167 7e-39 >seq72249 Length=10474385 Score = 203 bits (224), Expect = 1e-49 Identities = 177/216 (82%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||||| | || | |||||| ||||| | ||||| | |||||||||| Sbjct 1214846 ACTTATTCCAATTACAGGGCCTCGAAAGAGTCCTGTGTGGTTATTTTTCATCACTACCTC 1214905 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||| | |||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1214906 CCCGGGTCAGAGGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 1214965 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||||| || |||| || ||||||| ||||||| | ||||| | |||||||||| Sbjct 1214966 CTCAGGCTCCTTCCCCGGCATTGAACCCTGATTCCCCATCACCCGAGGTCACCATGGTAG 1215025 Query 182 GCCACTAT-CCTACCATCGAAAGTTGATAGGGCAGA 216 | || || ||||||| ||||||||||||||| || Sbjct 1215026 G-CATGATGACTACCATGGAAAGTTGATAGGGCTGA 1215060 >seq71766 Length=7900228 Score = 187 bits (206), Expect = 8e-45 Identities = 171/215 (80%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||| ||| | || ||||| || ||||||| ||||| | ||||||||||| Sbjct 3664124 ACTTATTCCAATCACAGGGCCTCAAAACAGTCCTGTATTGTTATTTTTCGTCACTACCTC 3664183 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| | |||||||| ||| ||||||||||||||||| | | | |||| ||| Sbjct 3664184 CCCAGGTCAGGAGTAGGTAATTTACGCACCTGCTGCCTTCCTTGGTTATAGCAGCCATTT 3664243 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||| ||||| ||||||| |||||| || ||| || | |||| ||| Sbjct 3664244 CTCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCTGTCACCTGTGGTCACCAAGGTCA 3664303 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 || |||||||||| ||||||||||||||| Sbjct 3664304 GCATGGCAACTACCATCGACAGTTGATAGGGCAGA 3664338 >seq19071 Length=225 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 19 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 78 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 79 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 138 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 139 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 183 >seq16796 Length=221 Score = 167 bits (184), Expect = 7e-39 Identities = 122/142 (86%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 96 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1 GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCAGAATCGAACCCTGATTC 60 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 ||||| |||||| | |||||||||||| ||||||||||||||||||||||||| Sbjct 61 CCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAG 120 Query 216 AAATTTGAATGAACCATCGCCG 237 | || ||||| | |||||| Sbjct 121 ACGTTCGAATGGGTCGTCGCCG 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509271278080