Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq72823 116 3e-21 seq74017 105 5e-18 seq71464 82.4 6e-11 >seq72823 Length=4236179 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| |||||||| Sbjct 500812 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTCCCCAGGTTCTGTTG 500871 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || ||||| ||||| || Sbjct 500872 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTG 500931 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 500932 AGACTCAATGATGGCATACCAAAG 500955 >seq74017 Length=2439271 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||| || | ||||| || || |||||||||||||||| Sbjct 45869 TGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCAGA 45810 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||| ||||| || ||||| ||||||||||| | ||||| || ||||||||||| | Sbjct 45809 TCCTCATCGAGAACGTGCACTCCGAGATGTACAGCTTGCTCATAGACACGTACATCAGAG 45750 Query 61376 A 61376 | Sbjct 45749 A 45749 >seq71464 Length=6720225 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||||| || || || ||||| | || ||||||||||| | ||| Sbjct 4559179 GAACCGCTGCTGAGAGAGAACCCCCGGCGCTTCGTGATCTTTCCCATCGAGTACCATGAT 4559120 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||||| ||||| || || || || || ||||| ||||||| |||||||| Sbjct 4559119 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCTGAGGAGGT 4559067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397205906247200