Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3970 253 3e-65 seq57 75.2 2e-11 >seq3970 Length=1057 Score = 253 bits (280), Expect = 3e-65 Identities = 186/211 (88%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 19 TAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAA 78 || ||||||| |||| ||||||| |||||||||||||||| |||||||||||| |||||| Sbjct 1057 TAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-CCTCGTTGAAGAGCAACAA 1000 Query 79 TTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCA 137 || ||||| |||||||||| ||||| | | ||||| |||||| ||| ||||| ||||||| Sbjct 999 TTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATTTCCCAGACCTCTCGGCCA 940 Query 138 AGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197 |||| || ||||| || | | |||||||||||||||||||||||||||| |||||||| Sbjct 939 AGGTT-TATACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGG 881 Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||| Sbjct 880 CATCACAGACCTGTTATTGCCTCAAACTTCC 850 >seq57 Length=14644473 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 166 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 ||||||| ||||| |||| | |||||||||||||||||||||||||||||| Sbjct 3217486 GTAGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 3217536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751969191735