Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3970 381 1e-103 seq23 140 6e-31 seq24 125 1e-26 >seq3970 Length=1057 Score = 381 bits (422), Expect = 1e-103 Identities = 242/260 (93%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 60 GGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAA 119 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 170 GGCGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAA 229 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTGC-GGTTCTATTTTGTTGGTTTCTAGGAC 178 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 230 TATATTAGCATGGAATAATAGAATAGGACGTTATGGTTCTATTTTGTTGGTTTCTAGGAC 289 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 | |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| Sbjct 290 CATCGTAATGATTAATAGGGACGGTCGGGGGTATCAGTATTCAGTTGTCAGAGGTGAAAT 349 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 350 TCTTGGATTTACTGAAGACTAACTACTGCGAAAGCATTTACCAAGGACGTTTTCATTAAT 409 Query 299 CAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||| Sbjct 410 CA-AGAACGAAAGTTAGGGG 428 >seq23 Length=27621139 Score = 140 bits (154), Expect = 6e-31 Identities = 208/291 (71%), Gaps = 18/291 (6%) Strand=Plus/Minus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 ||||||||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||| Sbjct 9211504 CATGCCCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 9211445 Query 97 TTCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| ||| || | |||| ||| |||||||| ||||||||| ||| Sbjct 9211444 TTCAAAGCAAGCCGGAGCCGCCTGCATACTGCAGCTAGGAATAATGGAATAGGAC-CGCG 9211386 Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||||| | | || | | |||||||| ||||| | | ||| | Sbjct 9211385 GTTCTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGACGGCCCAGGGCATT 9211326 Query 214 AGTATTCAATTGTCAGAGGTGAAATTC---TTGGATTTATTG---------AAGACTAAC 261 ||||| | ||||||||||||| || | || ||| ||||| || Sbjct 9211325 CGTATTGCGCCGCTAGAGGTGAAATTCAAGGTGAAATTCTTGGACAGGCGCAAGACGGAC 9211266 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | |||||||| || |||| ||||||||||| |||| ||||||||| Sbjct 9211265 CAGAGCGAAAGCATTTGCCAAAAATGTTTTCATTCATCA-AAAACGAAAGT 9211216 >seq24 Length=27450550 Score = 125 bits (138), Expect = 1e-26 Identities = 201/282 (71%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| || | ||| | | | ||||||||||||||||||| ||| Sbjct 263815 ATGCTCTTAGCTGAGTGTCCCACAGGGCCTGAAGCATTTACTTTGAAAAAATTAG--TGT 263758 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| || | |||| ||| |||||||| ||||||||| | || Sbjct 263757 TCAAAGCAGGCCTGAGCCACCTGGATACTGCAGCTAGGAATAATGGAATAGGACC-GTGG 263699 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||| |||| || | | || | | |||||||| ||||| ||| ||||| | Sbjct 263698 TTCTATTTTATTGGGTTTTGGAACTGAGGCCATGATTAAGAGGGACAGTTGGGGGCATTC 263639 Query 215 GTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 |||| |||| || ||||||||||||||| |||| || | | |||| Sbjct 263638 ATATT---GTGTCACTAGGGGTGAAATTCTTGGACCAGCACAAGATGGACCAGAGGGAAA 263582 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || |||| ||||||||||| |||| ||| ||||||| Sbjct 263581 GCATTTGTCAAGAATGTTTTCATTCATCA-AGAATGAAAGTT 263541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915161296192