Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3970 322 8e-86 seq57 165 1e-38 seq24 141 1e-31 seq58 134 2e-29 seq13 93.3 7e-17 seq3 80.6 4e-13 >seq3970 Length=1057 Score = 322 bits (356), Expect = 8e-86 Identities = 230/262 (88%), Gaps = 7/262 (3%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 932 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAG 873 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG- 119 ||||||||||||||||||||||||| | || ||| | ||||||||||||||||| | Sbjct 872 ACCTGTTATTGCCTCAAACTTCCATCGACTTGAAATCGATAGTCCCTCTAAGAAGTGACT 813 Query 120 ---CCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 ||| ||| || | | | |||||||| |||||||||||||||||||||||| | Sbjct 812 ATACCAGCAA--ATGCTAGCAGCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCA 756 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 755 ATTAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATC 696 Query 237 AAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||| Sbjct 695 AAGAAAGAGCTCTCAATCTGTC 674 >seq57 Length=14644473 Score = 165 bits (182), Expect = 1e-38 Identities = 186/244 (76%), Gaps = 20/244 (8%) Strand=Plus/Plus Query 21 GTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 80 ||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||| || Sbjct 3217486 GTAGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGG-TCAATCT 3217544 Query 81 TCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATAGTCGAT 137 | | |||||| | |||| | |||||||||||||| | | || || | | | Sbjct 3217545 -CAAGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGAC--TGCTGG-- 3217599 Query 138 GGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 |||| ||| |||||| | | ||||| ||||||||| ||||||||||||||| Sbjct 3217600 GGGGTCACGTAACTAGTTAGCATGCCATAGTCTCATTCGTTATCAGAATTAACCAGACAA 3217659 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCA---CCACCCATAGAATCAAGAAAGAGC 246 || |||| ||||||||||| |||| |||||| ||||||| ||||| ||||||||| Sbjct 3217660 ATAGCTCCCTCAACTAAGAACAGCCACGCACCACCGCCACCCACGGAATCGAGAAAGAGC 3217719 Query 247 TATC 250 |||| Sbjct 3217720 TATC 3217723 >seq24 Length=27450550 Score = 141 bits (156), Expect = 1e-31 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | |||| |||| ||||| |||||||||||||||||||| ||||||| Sbjct 263175 TAGTTAGCATGCCAGAGTCTTGTTCATTATCAGAATTAACCAGACAAATCACCCCACCAA 263234 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| | |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 263235 CTAAGAATAGTCATGCACCACCACCCACAGAATCAAGAAAGAGCTATCAGTCTGTC 263290 >seq58 Length=15364095 Score = 134 bits (148), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 35 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT-TCCATTGGCTGGA 93 |||| | |||||||||| || |||| |||| || ||| || || || || ||||| | Sbjct 15323912 GCCCTGGACATCTAAGGACAGCACACACCTCTT-TTGGCTTAATCTCTCTGGTGGCTAAA 15323970 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG--------CTAT 145 | || | |||||||||||||| | | |||| || ||||| ||| Sbjct 15323971 TGGCACTTGTCCCTCTAAGAAGTCGGAGTACAACTGACCTCT-TGGGGTTACATAACTAG 15324029 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||| | | ||||| ||| ||||| ||||||| || ||||||| ||||| | |||| Sbjct 15324030 TTAGCATGCCAGAGTCTCCTTCATTATCAGAATTAATCA-ACAAATCGCTCCATCGACTA 15324088 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || || ||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 15324089 AGGACAGCCATGCACTACCACCCACCAAATCAAGAAAGAGCTATCAATCTGTC 15324141 >seq13 Length=33082527 Score = 93.3 bits (102), Expect = 7e-17 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | |||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 32883163 TAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCCCTCCA-CAA 32883221 Query 203 CTAAGAACGGCCATGCACCAC 223 ||| ||| |||||||||| || Sbjct 32883222 CTATGAAAGGCCATGCACAAC 32883242 >seq3 Length=47073470 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| | |||| ||| | | | ||||||| |||||| ||| || | ||||||| Sbjct 46654835 TTAGCAGGCCAGAATCTCCTTCCTCACCTGAATTAATCAGACACATCCCTTCCCCAACTA 46654894 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||| ||||||| |||| || ||| ||||| ||||||| Sbjct 46654895 AGAATGGCCATGAACCATCAGCCACAGAATTGAGAAAGA 46654933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796767356349