Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3970 257 2e-66 seq23 82.4 8e-14 seq24 73.4 4e-11 >seq3970 Length=1057 Score = 257 bits (284), Expect = 2e-66 Identities = 172/189 (91%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATAC 61 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 173 GAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATAT 232 Query 62 ATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 |||| |||||||||||||||||||||| | ||||||||||||| ||||||||||||| Sbjct 233 ATTAGCATGGAATAATAGAATAGGACGTTATGGTTCTATTTTGTTGGTTTCTAGGACC-A 291 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 ||||||||| |||| ||| ||||||||| |||||||||| |||||| ||||||||||| Sbjct 292 TCGTAATGATTAATAGGGACGGTCGGGGGTATCAGTATTCAGTTGTCAGAGGTGAAATTC 351 Query 181 TTGGATTTA 189 ||||||||| Sbjct 352 TTGGATTTA 360 >seq23 Length=27621139 Score = 82.4 bits (90), Expect = 8e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||| ||| || | |||| | | Sbjct 9211467 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAGCCGGAGCCGCCTGCATACTGCAGCTA 9211408 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| ||||||||||||||| ||||| Sbjct 9211407 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT 9211368 >seq24 Length=27450550 Score = 73.4 bits (80), Expect = 4e-11 Identities = 127/179 (71%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG---CTCGAATACATTACCAT 69 ||||||||||||||||| || ||||||||||||||| | | | |||| | | Sbjct 263779 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCCTGAGCCACCTGGATACTGCAGCTA 263722 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| | ||||||||||| | || || | ||| | | |||| Sbjct 263721 GGAATAATGGAATAGGAC-CGTGGTTCTATTTTATTGGGTT-TTGGAACTGAGGCCATGA 263664 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTC---AAAGGTGAAATTCTTGGA 185 | || | ||| ||| ||||| | |||| |||| | ||||||||||||||| Sbjct 263663 TTAAGAGGGACAGTTGGGGGCATTCATATT---GTGTCACTAGGGGTGAAATTCTTGGA 263608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511979024160