Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq133 316 7e-84 seq19 178 4e-42 seq263 122 3e-25 seq28 104 8e-20 seq33 91.5 5e-16 seq114 87.8 6e-15 seq10 82.4 2e-13 >seq133 Length=5132600 Score = 316 bits (350), Expect = 7e-84 Identities = 250/298 (84%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||| |||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 179427 CTCCCACTTCTTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 179368 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||| ||||||| |||||| |||||| ||||||||||||| | | Sbjct 179367 CAGGGTCTTCTTTCCCCGTTGATTCCATCAAGCCTGTTCCCCTGGCTGTGGTTTCCATGG 179308 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC-ATTCATGCGCGTCACTAATTAGAT 415 | ||||| ||||||||||||||||||| || |||| ||||| | |||||| ||||||| Sbjct 179307 ACAGTAGGTAGGGACAGTGGGAATCTCTTTCATCCTGTTCATAC-AGTCACTGATTAGAT 179249 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 || ||||| ||||| | | ||||||||||||||||||||| ||| || ||| |||||| Sbjct 179248 GAGGAGGCTTTTGGTTGCTTTAAGAGAGTCATAGTTACTCGAGCCCTTCACCTGCGCTTC 179189 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 179188 ACTGAATTTCTTCACTTTGAC-------GCTCTGGGCAGAAATCACATTGCGTCAACA 179138 >seq19 Length=32701575 Score = 178 bits (196), Expect = 4e-42 Identities = 106/111 (95%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1852138 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 1852079 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 |||||||||||||||| |||||||| ||||| ||||||||||||| || || Sbjct 1852078 TGGCTGTGGTTTCGCTGGATAGTAGGTAGGGGCAGTGGGAATCTCATTCAT 1852028 Score = 102 bits (112), Expect = 3e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| ||||||| |||| |||| | |||||||||||||| |||| Sbjct 1852442 CTTCTGCTCCCTGGGAGTTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGAGTTACC 1852383 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| |||| ||| ||||||||| ||||||||||||||| || ||| Sbjct 1852382 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGT 1852337 >seq263 Length=292279 Score = 122 bits (134), Expect = 3e-25 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 162818 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 162759 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 162758 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 162712 >seq28 Length=27223524 Score = 104 bits (114), Expect = 8e-20 Identities = 110/143 (77%), Gaps = 8/143 (6%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||||||| || | | ||| |||||| | |||||| |||| ||| || Sbjct 16011151 CAAGGTCTTCTTTGCCTAGTTA--CCGGCAAGCCTG--CCCTTGACTGTCATTT----AG 16011100 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 | ||||| |||||||||||| | ||| || ||||||||||| | |||| |||||| || Sbjct 16011099 ACAGTAGCTAGGGACAGTGGAACTCTTATTCATCCATTCATGTACATCACCAATTAGGTG 16011040 Query 417 ACGAGGCATTTGGCTACCTTAAG 439 || |||||||| ||||||||||| Sbjct 16011039 ACAAGGCATTTAGCTACCTTAAG 16011017 Score = 80.6 bits (88), Expect = 9e-13 Identities = 73/92 (79%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 || |||||||||||||| | ||||| | | |||| ||||||| || || |||| Sbjct 16010567 AGGGTCATAGTTACTCCTGATGTTTATCTGGGCTTCACTGAATTTGTT-----TGGCATT 16010513 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||||||| ||||||||||| ||||| Sbjct 16010512 CAGAGCACTGGGCACAAATCACATTGTGTCAA 16010481 >seq33 Length=25819043 Score = 91.5 bits (100), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 ||||| | ||||||||| | ||||||| ||| ||||||| | | || ||||| | | Sbjct 10225338 AGATGGCTAGGCATTTG---ATCTTAAGAAAGTTATAGTTATTTCTACCATTTACTTGTG 10225282 Query 472 CTTGGTTGAATTTCTTCACTTTGACA-TTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||| ||||||||||| |||||| || |||||||||| || ||||||||| || ||| Sbjct 10225281 CTTCAAGGAATTTCTTCATGTTGACATTTAAGAGCACTGGACAAAAATCACATGGCATCA 10225222 Query 531 ACAT-CACTT 539 ||| ||||| Sbjct 10225221 TCATGCACTT 10225212 >seq114 Length=6206232 Score = 87.8 bits (96), Expect = 6e-15 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1765523 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1765573 >seq10 Length=35475609 Score = 82.4 bits (90), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 11/167 (7%) Strand=Plus/Plus Query 358 TAGTAGATAGGGACAGTG-----GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||| |||||||||| | |||||| || || |||| || || |||||| | | Sbjct 24489138 TAGTAGGCAGGGACAGTGACAAGGAAATCTCATTCATTCATTGGTGGGCTTCACTATTCA 24489197 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTC-ATAGTTACTCCCGCCGTTTACCCGCG 471 || |||||||||||||||||| || ||| | |||||| || | |||| | Sbjct 24489198 GACAGTGAGGCATTTGGCTACCTT--GAAGGTCAAGAGTTAC-CCTG--TGTTACTTTCA 24489252 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||| || ||||||||||| |||||||||| ||||| ||| |||| Sbjct 24489253 CTTCATTAAATTTCTTCACATTGACATTCATAGCACAAAGCACAAAT 24489299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635130847392