Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009763.3 Length=42973 Score E Sequences producing significant alignments: (Bits) Value seq371 255 2e-63 >seq371 Length=40469 Score = 255 bits (282), Expect = 2e-63 Identities = 324/441 (73%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 12379 ATATTTGATAT-TTAGAGG--TGGCGCAAT-GAGTAAATACAATGCTAAGAAAGTTGAGT 12434 ||||||||| | ||| ||| ||||||| | ||||||||||||||| ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 12435 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGTGAATATTACCAATATTTAGAA---- 12490 | ||||| || || ||||||||||| || ||||| || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 12491 -AGTAAT-ATGAATGGCACTAATTATGATCATATCGAAATACAACCGAAATTCGAATTAT 12548 | |||| || |||| |||||| ||||||| |||||||||| || || || Sbjct 658 GATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTAA 605 Query 12549 TACCAAAACTAGATAAACAACGAAAGATTGAATATATTGCAGACTTCGCGTTATATCTCG 12608 |||| ||| | | ||||||||| || | |||||||||||||||||| || ||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 12609 ATGACAAACTGATTGAAGTTATCGACATTAAAGGTATGCCAACCGAAGTAGCAAAACTTA 12668 | ||||| |||||||||| || ||| ||||||| ||| | || ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 12669 AAGCTAAGATTTTCAGACATAAATACAGAAACATAAAACTCAATTGGATATGTAAAGCAC 12728 | || ||| | || ||| || ||| || ||||||| | ||||||||||||||||| Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 12729 CTAAGTACACAGGCAAAACATGGATTACTTACGAGGAATTAATTAAAGCAAGACGAGAAC 12788 ||||||||||||| ||| ||| | || || || ||||| | || | ||||| |||| Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 12789 GCAAAAGAGAAATGAAGTGAT 12809 |||| | || | || ||||| Sbjct 364 GCAAGAAAGCTAAGAGGTGAT 344 Score = 174 bits (192), Expect = 4e-39 Identities = 261/371 (70%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 28828 TATCATTGGTAAAATTAAAGATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACT 28887 ||| |||| ||||||||| ||| || || ||||||||| | |||| ||||| Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 28888 TAATAAATTAATTGAAGGCTTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACC 28947 || ||| | || ||||| | |||||||| | || || | || ||||| || |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 28948 TAG------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 29001 || ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 29002 CGGTAAGATTGCACGTGATACATTCGCTACAGTTGGGGATAAAGGACGTGGAAATGGTCC 29061 |||||||||||| || |||||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 29062 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCTAA 29121 |||||| || ||||||||||| | || || |||||| || |||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 29122 TACAGACACTACTGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 29181 | ||| || || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 29182 TTCAATGTTAA 29192 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 9281 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 9340 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 9341 ACCTGGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAAATGAACCACTATG 9400 | || ||||||||| ||||||| || | || |||||| ||| || | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 9401 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCGATTGGCGTTA 9460 |||| | ||||||| ||||| | ||||| || |||||||| | || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 9461 AGTCGTTTGA-TGATAAATACCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 9519 | | |||| | | | || || || || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 9520 AATAAAATGCTGAAAGGAGAGAAA 9543 || |||||||||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 29289 GTAAAGGTACAAAGTGGCTTGGCGATAAAGTTGGTGATGTCATGGACTTTATCGATAATC 29348 ||||||||| | | |||||||||||||| ||||| ||||| | || | || ||||| | Sbjct 28067 GTAAAGGTAAAGACTGGCTTGGCGATAAGGTTGGAGATGTGCTTGATTGGATAGATAAAC 28008 Query 29349 CAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGAGT 29388 | || ||| | |||||| | ||| | ||||||||||||| Sbjct 28007 CGGGTAAATTGTTAAATAAGGTATTAGAAGCGTTTGGAGT 27968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137385100259630