Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq26 224 8e-54 seq1 163 2e-35 seq88 116 3e-21 seq34 111 1e-19 seq117 98.7 8e-16 >seq26 Length=26652979 Score = 224 bits (248), Expect = 8e-54 Identities = 611/918 (67%), Gaps = 27/918 (3%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||||| || || |||||| || || | || || | || || |||||||| | Sbjct 3408680 ATGAACTGCTGCTGAGAGAGAACCC-CGATGCTTTGTGATCTTTCCTATCGAGTACCACA 3408622 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 ||||||||| ||||| || || || ||||| ||||| ||||||| |||| || || Sbjct 3408621 ATATTTGGCAGATGTATAAGAAAGCCGAAGCCTCCTTTTGGACGGCTGAGGTGG---ATC 3408565 Query 61145 TGTCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACATTTCATTA 61201 | ||||||||||| | ||||||| || | | ||| || || | |||| ||| Sbjct 3408564 TTTCCAAAGACATTCAGCACTGGGAAGCACTAA---AGCCTGGGGAGAGATATTTTATTT 3408508 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 |||||| | | |||||||| || || || || |||| |||||| | |||| | Sbjct 3408507 CACATGTCCTCTCTTTCTTTGCTGCCAGCGATGGCATACTCAACGAGAATCTGGTGGAGC 3408448 Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || || || || || | | || || || |||||||| |||||||| |||||| Sbjct 3408447 GATTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCC 3408389 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 ||||| ||| |||| || || ||||||||| | || || || || ||| | | || Sbjct 3408388 ATGGAAAATATCCATTCTGAAATGTACAGTCTCCTTATTGACACTTACGTTAAAGACTCC 3408329 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 ||| | || |||| | |||||||||| || || ||||| ||| ||| Sbjct 3408328 AAAGAAAGAGAGTTTCTGTTTACCACCATCGAGACCATGCCCTGCATGAAGAAGAAGGCG 3408269 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGG 61498 || |||||||| ||| | | |||| || || | ||| ||||| |||| | Sbjct 3408268 GACTGGGCCTTGCGCTGG--CTTGGGGACAAAGAGGTCACCTATGGAGAACGTGTGCTTG 3408211 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| | | || || | || || || || ||||| | ||||| | | | | Sbjct 3408210 CCTTTGCCGCCATGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCGATCTTCTTGCTCA 3408151 Query 61559 AGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA-TGAGTTGATATCACGCGACGAG 61617 |||||| ||| | ||||| ||||| ||||| ||| ||| || || || | |||||| Sbjct 3408150 AGAAACAGGGAATAATGCCTGGTCTCACCTTTTCCAACTGACTTACTAGCA-GAGACGAG 3408092 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 ||| |||| ||||| ||||| || | ||||| | | || ||| | || || Sbjct 3408091 GGCTTGCACTGTGACTTTGCCTGCCTGATGTTCAAGC---ACCTTGTGCACAAACCCTCA 3408035 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 ||| || | ||| ||||| || | || | | ||||| ||||| || || || Sbjct 3408034 GAGTAGAGAGTGAAGGAGATCATTATCAATGCCTTCAGGATCGAGCAGGAGTTCCTCACC 3407975 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || || ||||| || |||||||| ||||| || ||||| |||||| || ||| Sbjct 3407974 GAGGCCTTGCCTGT-GAGCTCATCGGGATGAACTGCAATTTAATGAAGCAGTACATCGAA 3407916 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGG---TATGAAGCGGATCTATAATACGAAA 61854 || || || ||| | || || | || |||| | ||| | | | | || | || Sbjct 3407915 TTCGTGGCTGACAGGCTTATGCTGGAACTGGGGTTCAACAAGGAGGTTTTTCATGTGGAA 3407856 Query 61855 AACCCATTTGATTTCATGGA-CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 || ||||| || |||||||| ||| |||| ||||| || |||||||| | || ||||| Sbjct 3407855 AATCCATTCGACTTCATGGAGCAT-ATTTTTCTGGAAGGAAAGACGAACCTCTTTGAGAA 3407797 Query 61914 ACGTGTAGGCGACTATCA 61931 | |||| ||| ||||| Sbjct 3407796 GAGAGTAGACGAATATCA 3407779 >seq1 Length=78885850 Score = 163 bits (180), Expect = 2e-35 Identities = 576/879 (66%), Gaps = 27/879 (3%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||||||||| || | |||||||| || || || || ||||||| ||||| || || | Sbjct 12367640 CTCCTTGGCTAGATCACAGCTGGCTTCCAGGGCTACATAATAAATAGTCTCAAAGATTTG 12367699 Query 65755 -TCGATTAAGTTCAC-GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGT 65811 | | | || | || | ||||| || || | || ||| | |||||||| |||||| Sbjct 12367700 CTTGTTCAA--TAACTGGGCCTCTGGACTTTCAAAAGG-ATATCTCATCAGGATAAAAGT 12367756 Query 65812 GTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGA-ACGTCTCG 65870 || ||||| ||||||| ||||| || ||||| | ||| | ||| || | || | | Sbjct 12367757 ATCTGCCAGGTCTTGAACCCCAATTCCAATGGGGCAATGGTGTTTATTTGATAAGTGT-G 12367815 Query 65871 CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACAT 65930 |||| || ||||||||||| || |||| ||||| ||||||||| || | || || Sbjct 12367816 CCTCTGGGACAGGGTAGTAGTTTATATTAATAATTTTATTCAAATTTCG-GACA----AT 12367870 Query 65931 GCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 | || || || | || | | || | | || | | | | | || | | | | Sbjct 12367871 G-ACTTTA-GTGAC--TTCTGCCAATT-----TCTTAAAGTCATATGTGTGTTCTG-ATA 12367920 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 ||| || | ||||| || || || | ||| || || || | ||| || || Sbjct 12367921 TGACATACATTTTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTGG 12367980 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || ||||| ||||||||||| ||||| || || |||| |||||||| | Sbjct 12367981 TATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGT 12368040 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | ||||| |||| | | ||| ||||| | |||||| || ||||| ||||| || | Sbjct 12368041 TGCTCTTCTGATTATAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTGAG 12368100 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-ACCTTTG 66229 |||||||||||| | |||||| | || || || | | | | | ||||| Sbjct 12368101 TCTCAATGATGGCATACCAAAGTTGCTGAGCTTTTACAACTC-TGCGAACATGACCTTGT 12368159 Query 66230 CGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 || ||| ||| || | || || || ||||| || || ||||| ||| Sbjct 12368160 TCCTCATAACTTTCATACAACATCTCAAACTCCTCTCCCCAAACCTCATCCAGACCAGGA 12368219 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || | | |||||| |||| | ||| || || || || | ||| || ||| Sbjct 12368220 CATTCATTTGGACATATCAAAGGCCAGTCCTGATTAGTCTCGACTTGTTTCATGAAGAGA 12368279 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATT 66408 || || || || ||||| |||| ||||| | || | ||||| || | || ||| || Sbjct 12368280 TCTGGAATTCAAAGGGCAAAGAAAAGATCCCTGGCATGCTGCTCTTCCTTTCCTGTG-TT 12368338 Query 66409 TTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 || || || || |||||||||||||| || ||| || |||||||| || || || Sbjct 12368339 CTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATACCAAGGCTCCAGGTAAATAGCAAA 12368398 Query 66469 CGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACG 66528 | || | | ||| |||||||| || || || ||| | |||| | | | Sbjct 12368399 TGCCCCAGGATGCTTGTTTCCACCTTGATCAACATATCGACCTGTGCTGTTATACATTCT 12368458 Query 66529 CAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||| ||||| || || ||||| ||||||||||| || Sbjct 12368459 CAGCATTGGTACAAGGCCATTAGAATTGCCATTGGTCCC 12368497 >seq88 Length=9715273 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 5552721 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 5552662 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| ||||| ||||| || Sbjct 5552661 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTCTGTCTG 5552602 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 5552601 AGACTCAATGATGGCATACCAAAG 5552578 >seq34 Length=23970518 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||| || | ||||| || || |||||||||||||||| Sbjct 19379212 TGGAGCGGTTCAGCCAGGAGGTGCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGA 19379153 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||| |||||||| ||||| ||||||||||| | ||||| || || |||||||||| Sbjct 19379152 TCCTCATTGAGAATGTTCACTCCGAGATGTACAGCTTGCTCATAGACACTTACATCAGGG 19379093 Query 61376 A 61376 | Sbjct 19379092 A 19379092 >seq117 Length=6347111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 234/344 (68%), Gaps = 15/344 (4%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || || |||||| || | ||||| | | ||| || ||| | | ||| Sbjct 1408109 GAACCACTGCTGAGAGAGAACTCTTGGTGTTTCATCATCTTCTGTATGGAGCACCATGAT 1408168 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||| || || | | |||||||| ||||| | |||||||| |||| Sbjct 1408169 GTTTGGCAGATGTATAAGAAACCAGGGGCTTCCTTTTGGACAGCTGAGGAGGTGGATTAA 1408228 Query 61147 TCCAAAGACATGAATGACTGGGA-GCGTTTATCGAGCGGTGAACA-ACATTTCATTAAAC 61204 | ||||||| | ||||||| || | | ||| ||| | |||||| ||| || Sbjct 1408229 TTGAAAGACACCCAGCACTGGGAAGCCCTAA---AGCC-TGAGGAGACATTTTATTTCAC 1408284 Query 61205 ATGTGTTGGCGTTCT--TTGCC-GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 || | |||| |||| ||||| || || | | |||||||||||||| |||| | Sbjct 1408285 ATATTCTGGCTTTCTCCTTGCCAGC----GATTGCAAAGTCAATGAGAATTTGGTGGAGC 1408340 Query 61262 -GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 ||| || || || || ||| || | || || | ||||||||| || | ||| || ||| Sbjct 1408341 AATTTAGC-CAAGATGTTCAAATGACAGAAGCCCATTGTTTCTATGGTTACCAAATGGCC 1408399 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 |||| || | || || || ||||||||| | || ||||| || Sbjct 1408400 CTGGAAAACATACATTCTGAAATGTACAGTCTCCTTATCGACAC 1408443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547508972560