Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_011344.1 Length=47342 Score E Sequences producing significant alignments: (Bits) Value seq371 338 2e-88 >seq371 Length=40469 Score = 338 bits (374), Expect = 2e-88 Identities = 321/406 (79%), Gaps = 3/406 (1%) Strand=Plus/Minus Query 4331 TTTGACTTGCTACAACTCTACCTACAATCTTAACCTCGTCATCTTTTCCATATACTTGTG 4390 ||||||||||||| ||||||||||| || ||||| || |||| |||||||||||||| Sbjct 8010 TTTGACTTGCTACCACTCTACCTACTATTTTAACTTCATCATTCAATCCATATACTTGTG 7951 Query 4391 GGTAGTGACTAGGATTGTTTGATTCAGGAATTAAAATAATTTGGTCGTTGTTGTAACGTA 4450 | || ||| |||||||||| |||||||| ||||| |||||||| || ||| || | | Sbjct 7950 GATAATGATTAGGATTGTTGGATTCAGGTATTAATATAATTTGATCTCCGTTATATCTAA 7891 Query 4451 TTCTTTTGACAGTACCGTTGTATCCATTGACTAATACAACACCTAATTGGCCATTCTCAA 4510 | | || ||||| | ||||| || || | | |||||||||||||| ||||| |||| Sbjct 7890 TGCGCTTTACAGTTGCATTGTAACCGTTAATCATAACAACACCTAATTGACCATTTTCAA 7831 Query 4511 CAGTCGAATCCTTTTCAACAACTACAACGTCTCCGTCTTGAAAGAGTTTATCCATACTAT 4570 |||| ||||| ||||||| |||||||| || || |||||||| | |||||||||||| | Sbjct 7830 CAGTAGAATCTTTTTCAATCACTACAACATCGCCATCTTGAAATATTTTATCCATACTGT 7771 Query 4571 CCCCAGACACTTGCAATCCGAACTCTTCTTTATTAGAGTTCAAATTTTT-AGTAGCAAAG 4629 | |||||||||| | || || || ||||||||||| | ||| ||| | |||||||||| Sbjct 7770 CGCCAGACACTTTAAGACCAAATTCCTCTTTATTAGAAT-CAATTTTATCAGTAGCAAAG 7712 Query 4630 TATATGTAGTCGATTAAATTCTCTTCTGTATATATGGGCATTCCCGCAGATATCTTTGAT 4689 |||||||| || ||||| || ||||||| || || || | || |||||||| || || Sbjct 7711 TATATGTAATCAATTAAGTTTTCTTCTGAGTAGATAGGTAAACCAGCAGATATTTTAGAA 7652 Query 4690 ACAACCGGTATCTTTTTAACTGGTATGGTTTCAAGTTGAGGTTTCT 4735 ||||| || || ||||||||||||| ||||||| |||| | |||| Sbjct 7651 ACAACTGGAATTTTTTTAACTGGTAGTGTTTCAA-TTGAAGATTCT 7607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151365198152592