Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq93 95.1 5e-17 seq446 82.4 3e-13 seq59 82.4 3e-13 >seq93 Length=7280091 Score = 95.1 bits (104), Expect = 5e-17 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 4887580 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 4887521 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||| ||||| |||||||| | | ||||| |||||| |||||| Sbjct 4887520 ACCGGTTCGAGACTGATAGTCCACAAGTACCATAAGGGAAAGTTGAAAAAAACTTTG--- 4887464 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||| || || |||||| Sbjct 4887463 -GAGAGTTCAAGAGGGTGTGAAA 4887442 >seq446 Length=633463 Score = 82.4 bits (90), Expect = 3e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||| |||||||| | || |||||||| | ||| ||||||| |||||||||||| Sbjct 240111 TGGGACCTGAAAGATGATCAATTATGCCTGGACAGGCCAAAGCCAGGAGAAACTCTGGTG 240170 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656 |||| || || ||| ||| | |||||||| Sbjct 240171 GAGGTCCGTAGGGGTCCTGACATGCAAATC 240200 >seq59 Length=10161055 Score = 82.4 bits (90), Expect = 3e-13 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | | ||||| | ||||| Sbjct 7616652 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGTTAAAT 7616593 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | |||| |||| |||||| ||||||| || | ||||| | ||||| |||||| Sbjct 7616592 ACTGGCACGAGATCGATAGTCAACAAGTACTGT-AAGGAAAGTTAAAAAGAACTTTG 7616537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079732239650