Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq93 95.1 5e-17
seq446 82.4 3e-13
seq59 82.4 3e-13
>seq93
Length=7280091
Score = 95.1 bits (104), Expect = 5e-17
Identities = 107/143 (75%), Gaps = 4/143 (3%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || |||| |||||| | | ||||| |||||||
Sbjct 4887580 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 4887521
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||| ||||| |||||||| | | ||||| |||||| ||||||
Sbjct 4887520 ACCGGTTCGAGACTGATAGTCCACAAGTACCATAAGGGAAAGTTGAAAAAAACTTTG--- 4887464
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
||||||| || || ||||||
Sbjct 4887463 -GAGAGTTCAAGAGGGTGTGAAA 4887442
>seq446
Length=633463
Score = 82.4 bits (90), Expect = 3e-13
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
||||||| |||||||| | || |||||||| | ||| ||||||| ||||||||||||
Sbjct 240111 TGGGACCTGAAAGATGATCAATTATGCCTGGACAGGCCAAAGCCAGGAGAAACTCTGGTG 240170
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATC 656
|||| || || ||| ||| | ||||||||
Sbjct 240171 GAGGTCCGTAGGGGTCCTGACATGCAAATC 240200
>seq59
Length=10161055
Score = 82.4 bits (90), Expect = 3e-13
Identities = 89/117 (76%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || ||| |||||| | | ||||| | |||||
Sbjct 7616652 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGTTAAAT 7616593
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156
| |||| |||| |||||| ||||||| || | ||||| | ||||| ||||||
Sbjct 7616592 ACTGGCACGAGATCGATAGTCAACAAGTACTGT-AAGGAAAGTTAAAAAGAACTTTG 7616537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079732239650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |