Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq32 122 4e-26
seq93 100 1e-19
>seq32
Length=13786167
Score = 122 bits (134), Expect = 4e-26
Identities = 88/102 (86%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60
|||||||||||||||||||| ||||||||||| ||| |||||||||||| |||| |||||
Sbjct 4936911 GGAAAAGAAACTAACCAGGAATCCCTCAGTAAGGGCAAGTGAACAGGGAGGAGCGCAGCG 4936970
Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102
|| | |||| |||| ||||||||| ||||| ||| ||| ||
Sbjct 4936971 CCAAGTCCCAACCCCTCGGTGGGGCCCGGGAAATGCGGCCTA 4937012
>seq93
Length=7280091
Score = 100 bits (110), Expect = 1e-19
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 17 AGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG 76
|||||| |||||||||| | |||| ||||||||| ||||||| ||||||||||||||||
Sbjct 4887784 AGGATTACCTCAGTAACAGTGAGTAAACAGGGAAAAGCCCAGTGCCGAATCCCCGCCCCT 4887725
Query 77 CGGTGGGGCGCGGGACATGTGGC 99
| ||| ||| ||||| |||||||
Sbjct 4887724 CAGTGAGGCACGGGAAATGTGGC 4887702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230373036720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |