Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq32 122 4e-26 seq93 100 1e-19 >seq32 Length=13786167 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||| ||||||||||| ||| |||||||||||| |||| ||||| Sbjct 4936911 GGAAAAGAAACTAACCAGGAATCCCTCAGTAAGGGCAAGTGAACAGGGAGGAGCGCAGCG 4936970 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || | |||| |||| ||||||||| ||||| ||| ||| || Sbjct 4936971 CCAAGTCCCAACCCCTCGGTGGGGCCCGGGAAATGCGGCCTA 4937012 >seq93 Length=7280091 Score = 100 bits (110), Expect = 1e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 17 AGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCG 76 |||||| |||||||||| | |||| ||||||||| ||||||| |||||||||||||||| Sbjct 4887784 AGGATTACCTCAGTAACAGTGAGTAAACAGGGAAAAGCCCAGTGCCGAATCCCCGCCCCT 4887725 Query 77 CGGTGGGGCGCGGGACATGTGGC 99 | ||| ||| ||||| ||||||| Sbjct 4887724 CAGTGAGGCACGGGAAATGTGGC 4887702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230373036720