Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq145 239 8e-61
seq280 235 9e-60
seq48 199 7e-49
seq159 87.8 3e-15
seq3 82.4 1e-13
>seq145
Length=5050978
Score = 239 bits (264), Expect = 8e-61
Identities = 210/262 (80%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1334886 ATCAGTAGGATAAAACTAGACCACCTCATGACGGTCTAAACCCAGCTCACACTCCCTATT 1334945
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||| ||||| |||||||| ||| |||||||||||| ||||||||||||| | |||
Sbjct 1334946 AGTGAGTGAAAAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCAACA 1335005
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
| |||||||||||||| || || |||||||| |||||| |||||||||||||||||||
Sbjct 1335006 TTAAAGGATCAAAAAGCGACATCACTATGAACACTTGGCCACCACAAGCCAGTTATCCCT 1335065
Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272
||||| | ||||||| |||||| || | |||| | || | ||||||| |||||
Sbjct 1335066 GTGGTGAATTTTCTGACACCTCCTGCTTAAAATCCAAAAGGTCAGAAGGATCATGAGGCC 1335125
Query 273 ACACTTTCATGGTTTGTATTCA 294
||||| || ||||||||
Sbjct 1335126 CTGATTTCACAGTATGTATTCA 1335147
>seq280
Length=2082047
Score = 235 bits (260), Expect = 9e-60
Identities = 162/182 (89%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 29270 CCTGTCTCACAACAGTCTAAACCCAGCTCACGTTCC-TGTTAGTGGGTGAACAATCCAAC 29328
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 29329 GCTTGGTGAATTCTGCTTCACACTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA 29388
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231
| | ||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 29389 CATTGCTATGAACACTTGGCCGCCACAAGCCAGTTATCCCCGTGGTAACTTTTCTGACAA 29448
Query 232 CT 233
||
Sbjct 29449 CT 29450
>seq48
Length=11410647
Score = 199 bits (220), Expect = 7e-49
Identities = 139/158 (88%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1602572 TCGTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 1602513
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||
Sbjct 1602512 GTAGTGGGTGAACAATCCAACCCTTGATGAATTCTGCTTCACAATGATAGGAAGAGCTGA 1602453
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188
||| |||||||| ||||| || | |||||||||| ||
Sbjct 1602452 TATCAAAGGATCAGAAAGCCACATGGCTATGAACGTTT 1602415
>seq159
Length=4579562
Score = 87.8 bits (96), Expect = 3e-15
Identities = 125/174 (72%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111
||||||||| || |||||||||||||||||| ||| | | | | | ||| ||||
Sbjct 2382855 CCTGTCTCAGGATGGTCTAAACCCAGCTCACATTCACGGTCACTAGACACACAGTCCAGT 2382914
Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171
| || | ||||||||| | || ||||||||| ||| | | | || || || |
Sbjct 2382915 GGTTGACAAATTCTGCTGCACATCGAAAGGAAGAGCAGACGGCCA--GGTCCAACAGTGA 2382972
Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225
| | ||||||| ||||||||||| ||||| |||||||||| | ||||| ||
Sbjct 2382973 CAGCTCTATGAAGGCTTGGCTGCCGTCAGCCACTTATCCCTGT-GCAACTTCTC 2383025
>seq3
Length=41493964
Score = 82.4 bits (90), Expect = 1e-13
Identities = 185/282 (66%), Gaps = 47/282 (17%)
Strand=Plus/Plus
Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
|||||||| ||| || || ||||||||| |||||||||| |||| || || ||
Sbjct 8109228 ATTACCAT---GGCAACATGTTATCAGTAGGATAAAACTAAC-----TCATAACAGTTTA 8109279
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
|||| | ||| |||||||||||||||||||||
Sbjct 8109280 AACCAGGTTCATGTTCCCTATTAGTGGGTGAAC--------------------------- 8109312
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||||| ||| | | |||| || |||||||||| || || | ||| | || |||
Sbjct 8109313 --GATGATAAGAATAATCTACATTGAGGGATCAAAAAAGAAAGTTACCATGCATGC-TGG 8109369
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
||||||| |||||||| || | ||||| | | |||||| || | ||| | |
Sbjct 8109370 CTGCCAC-AGCCAGTTCTC-------TCACTTTCCCGATACCTCTTGCTTAAAACCCCAA 8109421
Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| | ||||||| | |||||||||||||||| ||||||
Sbjct 8109422 AGACCAGAAGGATCATGATGCCACACTTTCATGGTCTGTATT 8109463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854293345248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |