Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq145 239 8e-61 seq280 235 9e-60 seq48 199 7e-49 seq159 87.8 3e-15 seq3 82.4 1e-13 >seq145 Length=5050978 Score = 239 bits (264), Expect = 8e-61 Identities = 210/262 (80%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| |||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 1334886 ATCAGTAGGATAAAACTAGACCACCTCATGACGGTCTAAACCCAGCTCACACTCCCTATT 1334945 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||| ||||| |||||||| ||| |||||||||||| ||||||||||||| | ||| Sbjct 1334946 AGTGAGTGAAAAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGTCAACA 1335005 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | |||||||||||||| || || |||||||| |||||| ||||||||||||||||||| Sbjct 1335006 TTAAAGGATCAAAAAGCGACATCACTATGAACACTTGGCCACCACAAGCCAGTTATCCCT 1335065 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||| | ||||||| |||||| || | |||| | || | ||||||| ||||| Sbjct 1335066 GTGGTGAATTTTCTGACACCTCCTGCTTAAAATCCAAAAGGTCAGAAGGATCATGAGGCC 1335125 Query 273 ACACTTTCATGGTTTGTATTCA 294 ||||| || |||||||| Sbjct 1335126 CTGATTTCACAGTATGTATTCA 1335147 >seq280 Length=2082047 Score = 235 bits (260), Expect = 9e-60 Identities = 162/182 (89%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 29270 CCTGTCTCACAACAGTCTAAACCCAGCTCACGTTCC-TGTTAGTGGGTGAACAATCCAAC 29328 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| |||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 29329 GCTTGGTGAATTCTGCTTCACACTGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGA 29388 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 | | ||||||||| |||||| ||||||||||||||||||| ||||||||||||||| || Sbjct 29389 CATTGCTATGAACACTTGGCCGCCACAAGCCAGTTATCCCCGTGGTAACTTTTCTGACAA 29448 Query 232 CT 233 || Sbjct 29449 CT 29450 >seq48 Length=11410647 Score = 199 bits (220), Expect = 7e-49 Identities = 139/158 (88%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1602572 TCGTCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTA 1602513 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| ||| |||||||||||| |||||||||||||| || Sbjct 1602512 GTAGTGGGTGAACAATCCAACCCTTGATGAATTCTGCTTCACAATGATAGGAAGAGCTGA 1602453 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 ||| |||||||| ||||| || | |||||||||| || Sbjct 1602452 TATCAAAGGATCAGAAAGCCACATGGCTATGAACGTTT 1602415 >seq159 Length=4579562 Score = 87.8 bits (96), Expect = 3e-15 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| || |||||||||||||||||| ||| | | | | | ||| |||| Sbjct 2382855 CCTGTCTCAGGATGGTCTAAACCCAGCTCACATTCACGGTCACTAGACACACAGTCCAGT 2382914 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 | || | ||||||||| | || ||||||||| ||| | | | || || || | Sbjct 2382915 GGTTGACAAATTCTGCTGCACATCGAAAGGAAGAGCAGACGGCCA--GGTCCAACAGTGA 2382972 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 | | ||||||| ||||||||||| ||||| |||||||||| | ||||| || Sbjct 2382973 CAGCTCTATGAAGGCTTGGCTGCCGTCAGCCACTTATCCCTGT-GCAACTTCTC 2383025 >seq3 Length=41493964 Score = 82.4 bits (90), Expect = 1e-13 Identities = 185/282 (66%), Gaps = 47/282 (17%) Strand=Plus/Plus Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||||| ||| || || ||||||||| |||||||||| |||| || || || Sbjct 8109228 ATTACCAT---GGCAACATGTTATCAGTAGGATAAAACTAAC-----TCATAACAGTTTA 8109279 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||| | ||| ||||||||||||||||||||| Sbjct 8109280 AACCAGGTTCATGTTCCCTATTAGTGGGTGAAC--------------------------- 8109312 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||| ||| | | |||| || |||||||||| || || | ||| | || ||| Sbjct 8109313 --GATGATAAGAATAATCTACATTGAGGGATCAAAAAAGAAAGTTACCATGCATGC-TGG 8109369 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||| |||||||| || | ||||| | | |||||| || | ||| | | Sbjct 8109370 CTGCCAC-AGCCAGTTCTC-------TCACTTTCCCGATACCTCTTGCTTAAAACCCCAA 8109421 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | ||||||| | |||||||||||||||| |||||| Sbjct 8109422 AGACCAGAAGGATCATGATGCCACACTTTCATGGTCTGTATT 8109463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854293345248