Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq48 264 4e-68
seq4808 228 3e-57
seq462 223 1e-55
seq221 217 5e-54
seq146 168 2e-39
seq7 152 2e-34
seq23 141 3e-31
seq217 122 3e-25
seq167 105 2e-20
seq50 100 9e-19
seq92 77.0 1e-11
>seq48
Length=11410647
Score = 264 bits (292), Expect = 4e-68
Identities = 231/287 (80%), Gaps = 13/287 (5%)
Strand=Plus/Minus
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
|||| ||||||| | ||| | ||| ||| | ||| |||||| |||| | |
Sbjct 1602416 TTCTGCACCTCTTATGTCTCTCCACCAAGCCAGAC-------AAGCTCTACAGCATTGTT 1602364
Query 307 TTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365
||||||| |||||||| ||||| | ||||||||||||||||||| | | ||||| ||
Sbjct 1602363 TTTCCCCCGCTGATTCTGCCAAACTCGTTCCCTTGGCTGTGGTTACATTGGATAGGAGGG 1602304
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
|||| |||||||| |||| || |||||||||||| | ||||||||||||||| |||||||
Sbjct 1602303 AGGGGCAGTGGGAGTCTCCTTCATCCATTCATGCACATCACTAATTAGATGATGAGGCAT 1602244
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
||||||||||||| |||||| |||| |||||| || |||||||| |||| |||||||
Sbjct 1602243 TTGGCTACCTTAATAGAGTCCTAGTAACTCCCCCCATTTACCCGTGCTTCACTGAATTT- 1602185
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1602184 ----CTTTGGCATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 1602142
>seq4808
Length=4207
Score = 228 bits (252), Expect = 3e-57
Identities = 189/230 (82%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
|||||||| | ||| || || ||||| |||| ||||||||||||| ||| |||||||
Sbjct 2714 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTGGCTGTGGTTTTGCTGGATAGTAC 2655
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|||| || ||||||||||| || ||| |||||||| |||||||||||| || |||||
Sbjct 2654 ATAGAGAAAGTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 2597
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||| |||||||| |||||||||||||| ||||||| | || ||| ||||||
Sbjct 2596 ATTTGAGGGCCTTAAGATTATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 2537
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||| |||||||||||||||||| | || ||||
Sbjct 2536 TCTTCACTTTGACATTCAGAGGACTGGGCAGAAATCACATGGAGTTAACA 2487
>seq462
Length=555918
Score = 223 bits (246), Expect = 1e-55
Identities = 182/220 (83%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
|||||||| | ||| || || ||||| |||| ||||||||||||| ||| |||||||
Sbjct 72105 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTGGCTGTGGTTTTGCTGGATAGTAC 72046
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|||| || ||||||||||| || ||| |||||||| |||||||||||| || |||||
Sbjct 72045 ATAGAGAAAGTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 71988
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||| |||||||| |||||||||||||| ||||||| | || ||| ||||||
Sbjct 71987 ATTTGAGGGCCTTAAGATTATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 71928
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
||||||||||||||||||||| ||||||||||||||||||
Sbjct 71927 TCTTCACTTTGACATTCAGAGGACTGGGCAGAAATCACAT 71888
Score = 223 bits (246), Expect = 1e-55
Identities = 188/230 (82%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
|||||||| | ||| || || ||||| |||| || |||||||||| ||| |||||||
Sbjct 156490 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTAGCTGTGGTTTTGCTGGATAGTAC 156431
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|||| || | ||||||||| || ||| |||||||| |||||||||||| || |||||
Sbjct 156430 ATAGAGAAACTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 156373
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
||||| |||||||||| |||||||||||||| ||||||| | || ||| ||||||
Sbjct 156372 ATTTGAGGGCCTTAAGAGAATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 156313
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||| |||||||| |||||||||||||||||| | || ||||
Sbjct 156312 TCTTCACTTTGAAATTCAGAGGACTGGGCAGAAATCACATGGAGTTAACA 156263
>seq221
Length=2982682
Score = 217 bits (240), Expect = 5e-54
Identities = 137/148 (93%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 8031 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCACTGATTCAGCCAAGCCCCTTCCCT 8090
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398
||||||||||||| ||||||||||| ||||||||||||||||||| || ||| ||||| |
Sbjct 8091 TGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCTATTCAAG 8150
Query 399 CGCGTCACTAATTAGATGACGAGGCATT 426
|| ||||||||||||||||||||||||
Sbjct 8151 TGCATCACTAATTAGATGACGAGGCATT 8178
>seq146
Length=4938933
Score = 168 bits (186), Expect = 2e-39
Identities = 185/240 (77%), Gaps = 6/240 (3%)
Strand=Plus/Minus
Query 282 TAGAGTCAAGCTCAACAGGG-TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340
|| ||||| | |||||| | |||| ||| || | | || |||||||| ||||||||
Sbjct 3470771 TATAGTCAGGTTCAACAAGAATCTTGTTTGCCTTCAGGTTTTGCCAAGCCA-TTCCCTTG 3470713
Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400
||||||||||| ||||| ||| || ||||||| | ||| || || ||||| ||||||
Sbjct 3470712 GCTGTGGTTTCATCAGATAATAGGTAAGGACAGTAG-AATATCATTCATCCACTCATGCA 3470654
Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460
| || |||||||||||||| ||| |||||||||| | |||||||| | ||| ||| |
Sbjct 3470653 CTTCCTTAATTAGATGACGATGCACTTGGCTACCTCA--AGAGTCATGGATACACCCATC 3470596
Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
|||||| | ||| ||||||||||||| || | |||||||||||| |||| || |||
Sbjct 3470595 ATTTACCTGGGCTGTAGTGAATTTCTTCAC-TTCAAATTCAGAGCACTAGGCAAAACTCA 3470537
>seq7
Length=30153896
Score = 152 bits (168), Expect = 2e-34
Identities = 154/199 (77%), Gaps = 20/199 (10%)
Strand=Plus/Minus
Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA-GATAGGGACAGTGGGAATCTCGTTA 387
|| ||||||||||||||| ||| ||| || | | | |||||||||| |||||||| ||
Sbjct 10240683 CCTGTTCCCTTGGCTGTGATTTTGCTGGACTGCAAGGTAGGGACAGTAGGAATCTCATTC 10240624
Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447
|||| |||||| | ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 10240623 ATCCCCTCATGCTCATCACTAATTAGATGATGAGACATTTGGCTACCTTAAGAGAGTCAT 10240564
Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
|||||| ||| | |||||||| |||| |||||||||| | |||
Sbjct 10240563 AGTTAC--------TTTGC---------ATTGAATTTGTTCAGTTTGACATTC-TAACAC 10240522
Query 508 TGGGCAGAAATCACATTGC 526
|||| || ||||| |||||
Sbjct 10240521 TGGG-AGGAATCATATTGC 10240504
>seq23
Length=17833296
Score = 141 bits (156), Expect = 3e-31
Identities = 187/257 (73%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
||||||||| ||||||||||||||||||| || |||| ||| ||| ||| |||
Sbjct 8286010 GACTAGAGTGGGGCTCAACAGGGTCTTCTTTGCCAGCTGT-----CCATGCCTGTTTCCT 8286064
Query 339 TGGCTGTGGTTTCGCTAGATA-GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
|||||||| ||| || ||| |||| || ||||| ||||||| | | | || |||||
Sbjct 8286065 TGGCTGTGATTTAACTGAATAAGTAGGTAAGGACACTGGGAATAGTGGTCACCCTTTCAT 8286124
Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457
| ||||||||||| | || | ||||| | | || ||||| | ||||| |||
Sbjct 8286125 GTATATCACTAATTAGTTTACCAAATATTTGATTGTGTAAAAAGAGTTACAGTTATTCCT 8286184
Query 458 GCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
||| |||| | | |||| || |||||||||| |||| ||| | ||||| |||||
Sbjct 8286185 GCCATTTAACTTGTGCTTCATTAAATTTCTTCATGTTGATATTTAAGACACTGCACAGAA 8286244
Query 517 ATCACATTGCGTCAACA 533
|||||||| | ||||||
Sbjct 8286245 ATCACATTACATCAACA 8286261
>seq217
Length=3091153
Score = 122 bits (134), Expect = 3e-25
Identities = 109/134 (81%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
|||||||| | |||||||||||| | ||||||||| |||||||| ||||||| ||
Sbjct 867458 CCATTCATATACACCACTAATTAGATCAT-AGGCATTTGATTACCTTAAAAGAGTCACAG 867400
Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509
|||||| || ||||||| || ||| |||||||||||||| |||| |||||||||||
Sbjct 867399 TTACTCT-GCTGTTTACCTGCACTTCACTGAATTTCTTCACTGTGACTTTCAGAGCACTA 867341
Query 510 GGCAGAAATCACAT 523
||| |||||||||
Sbjct 867340 TGCAAAAATCACAT 867327
>seq167
Length=4397592
Score = 105 bits (116), Expect = 2e-20
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
|| ||||| ||||||| ||||||| || | |||| | ||||||||||||||| ||| |
Sbjct 339042 TTCTGCTCCACAGGAGGTTTCTGTCCTTCCTGAGCTCGCCTTAGGACACCTGCATTACCG 339101
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| || |||||| ||||||||||||||| || ||||
Sbjct 339102 TTTGACAGGTGTACCTCCCCAGTCAAACTCCCCACCTGGCACTGTC 339147
>seq50
Length=11047261
Score = 100 bits (110), Expect = 9e-19
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
|||||||| |||||||||||||||||||||| ||||||||| || | |||||| ||| |
Sbjct 2021459 GATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCAAGCTCATCACTAGTTAATT 2021400
Query 416 GACGAGGCATTTGGCTACCT 435
||| |||||||||| |||||
Sbjct 2021399 GACAAGGCATTTGGTTACCT 2021380
>seq92
Length=7293603
Score = 77.0 bits (84), Expect = 1e-11
Identities = 122/173 (71%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404
|||||| |||||| || || ||| | ||||| ||| | ||| | | ||| |
Sbjct 2379684 TGGTTTTGCTAGACAGGAGGATGGGGCTGTGGGTTCCTCACTCATC-ACTGATGTATCTT 2379626
Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464
||||||||||||| || ||| || ||||| ||||| ||| | ||||||| | | | |||
Sbjct 2379625 ACTAATTAGATGATGATGCACTTAGCTACATTAAGGGAG--ACAGTTACTTCTGGCATTT 2379568
Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
| | | || | || |||||||||| |||| | ||||||||||| |||
Sbjct 2379567 ATCTACTCTATATCAAACTTCTTCACTTGGACACTACAAGCACTGGGCAAAAA 2379515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634995877984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |