Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq48 264 4e-68 seq4808 228 3e-57 seq462 223 1e-55 seq221 217 5e-54 seq146 168 2e-39 seq7 152 2e-34 seq23 141 3e-31 seq217 122 3e-25 seq167 105 2e-20 seq50 100 9e-19 seq92 77.0 1e-11 >seq48 Length=11410647 Score = 264 bits (292), Expect = 4e-68 Identities = 231/287 (80%), Gaps = 13/287 (5%) Strand=Plus/Minus Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 |||| ||||||| | ||| | ||| ||| | ||| |||||| |||| | | Sbjct 1602416 TTCTGCACCTCTTATGTCTCTCCACCAAGCCAGAC-------AAGCTCTACAGCATTGTT 1602364 Query 307 TTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| |||||||| ||||| | ||||||||||||||||||| | | ||||| || Sbjct 1602363 TTTCCCCCGCTGATTCTGCCAAACTCGTTCCCTTGGCTGTGGTTACATTGGATAGGAGGG 1602304 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||| |||||||| |||| || |||||||||||| | ||||||||||||||| ||||||| Sbjct 1602303 AGGGGCAGTGGGAGTCTCCTTCATCCATTCATGCACATCACTAATTAGATGATGAGGCAT 1602244 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 ||||||||||||| |||||| |||| |||||| || |||||||| |||| ||||||| Sbjct 1602243 TTGGCTACCTTAATAGAGTCCTAGTAACTCCCCCCATTTACCCGTGCTTCACTGAATTT- 1602185 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1602184 ----CTTTGGCATTCAGAGCACTGGGCAGAAATCACATTGTGTCAAC 1602142 >seq4808 Length=4207 Score = 228 bits (252), Expect = 3e-57 Identities = 189/230 (82%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||| | ||| || || ||||| |||| ||||||||||||| ||| ||||||| Sbjct 2714 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTGGCTGTGGTTTTGCTGGATAGTAC 2655 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||| || ||||||||||| || ||| |||||||| |||||||||||| || ||||| Sbjct 2654 ATAGAGAAAGTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 2597 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||| |||||||| |||||||||||||| ||||||| | || ||| |||||| Sbjct 2596 ATTTGAGGGCCTTAAGATTATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 2537 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||| |||||||||||||||||| | || |||| Sbjct 2536 TCTTCACTTTGACATTCAGAGGACTGGGCAGAAATCACATGGAGTTAACA 2487 >seq462 Length=555918 Score = 223 bits (246), Expect = 1e-55 Identities = 182/220 (83%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||| | ||| || || ||||| |||| ||||||||||||| ||| ||||||| Sbjct 72105 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTGGCTGTGGTTTTGCTGGATAGTAC 72046 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||| || ||||||||||| || ||| |||||||| |||||||||||| || ||||| Sbjct 72045 ATAGAGAAAGTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 71988 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||| |||||||| |||||||||||||| ||||||| | || ||| |||||| Sbjct 71987 ATTTGAGGGCCTTAAGATTATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 71928 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||||||||||||| |||||||||||||||||| Sbjct 71927 TCTTCACTTTGACATTCAGAGGACTGGGCAGAAATCACAT 71888 Score = 223 bits (246), Expect = 1e-55 Identities = 188/230 (82%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||| | ||| || || ||||| |||| || |||||||||| ||| ||||||| Sbjct 156490 TTCTTTCCTCACTGGGTCTGCAGAGCCCATTCCTTTAGCTGTGGTTTTGCTGGATAGTAC 156431 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||| || | ||||||||| || ||| |||||||| |||||||||||| || ||||| Sbjct 156430 ATAGAGAAACTGGGAATCTTTTTCATCTATTCATGCA--TCACTAATTAGAAGAGGAGGC 156373 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||| |||||||||| |||||||||||||| ||||||| | || ||| |||||| Sbjct 156372 ATTTGAGGGCCTTAAGAGAATCATAGTTACTCCCTCCGTTTAACTGCACTTCACTGAATT 156313 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||| |||||||||||||||||| | || |||| Sbjct 156312 TCTTCACTTTGAAATTCAGAGGACTGGGCAGAAATCACATGGAGTTAACA 156263 >seq221 Length=2982682 Score = 217 bits (240), Expect = 5e-54 Identities = 137/148 (93%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| Sbjct 8031 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCACTGATTCAGCCAAGCCCCTTCCCT 8090 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||| ||||||||||| ||||||||||||||||||| || ||| ||||| | Sbjct 8091 TGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCTATTCAAG 8150 Query 399 CGCGTCACTAATTAGATGACGAGGCATT 426 || |||||||||||||||||||||||| Sbjct 8151 TGCATCACTAATTAGATGACGAGGCATT 8178 >seq146 Length=4938933 Score = 168 bits (186), Expect = 2e-39 Identities = 185/240 (77%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGG-TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 || ||||| | |||||| | |||| ||| || | | || |||||||| |||||||| Sbjct 3470771 TATAGTCAGGTTCAACAAGAATCTTGTTTGCCTTCAGGTTTTGCCAAGCCA-TTCCCTTG 3470713 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||| ||||| ||| || ||||||| | ||| || || ||||| |||||| Sbjct 3470712 GCTGTGGTTTCATCAGATAATAGGTAAGGACAGTAG-AATATCATTCATCCACTCATGCA 3470654 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 | || |||||||||||||| ||| |||||||||| | |||||||| | ||| ||| | Sbjct 3470653 CTTCCTTAATTAGATGACGATGCACTTGGCTACCTCA--AGAGTCATGGATACACCCATC 3470596 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||| | ||| ||||||||||||| || | |||||||||||| |||| || ||| Sbjct 3470595 ATTTACCTGGGCTGTAGTGAATTTCTTCAC-TTCAAATTCAGAGCACTAGGCAAAACTCA 3470537 >seq7 Length=30153896 Score = 152 bits (168), Expect = 2e-34 Identities = 154/199 (77%), Gaps = 20/199 (10%) Strand=Plus/Minus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA-GATAGGGACAGTGGGAATCTCGTTA 387 || ||||||||||||||| ||| ||| || | | | |||||||||| |||||||| || Sbjct 10240683 CCTGTTCCCTTGGCTGTGATTTTGCTGGACTGCAAGGTAGGGACAGTAGGAATCTCATTC 10240624 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||| |||||| | ||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 10240623 ATCCCCTCATGCTCATCACTAATTAGATGATGAGACATTTGGCTACCTTAAGAGAGTCAT 10240564 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 |||||| ||| | |||||||| |||| |||||||||| | ||| Sbjct 10240563 AGTTAC--------TTTGC---------ATTGAATTTGTTCAGTTTGACATTC-TAACAC 10240522 Query 508 TGGGCAGAAATCACATTGC 526 |||| || ||||| ||||| Sbjct 10240521 TGGG-AGGAATCATATTGC 10240504 >seq23 Length=17833296 Score = 141 bits (156), Expect = 3e-31 Identities = 187/257 (73%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||| ||||||||||||||||||| || |||| ||| ||| ||| ||| Sbjct 8286010 GACTAGAGTGGGGCTCAACAGGGTCTTCTTTGCCAGCTGT-----CCATGCCTGTTTCCT 8286064 Query 339 TGGCTGTGGTTTCGCTAGATA-GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||| ||| || ||| |||| || ||||| ||||||| | | | || ||||| Sbjct 8286065 TGGCTGTGATTTAACTGAATAAGTAGGTAAGGACACTGGGAATAGTGGTCACCCTTTCAT 8286124 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 | ||||||||||| | || | ||||| | | || ||||| | ||||| ||| Sbjct 8286125 GTATATCACTAATTAGTTTACCAAATATTTGATTGTGTAAAAAGAGTTACAGTTATTCCT 8286184 Query 458 GCCGTTTACCC-GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||| |||| | | |||| || |||||||||| |||| ||| | ||||| ||||| Sbjct 8286185 GCCATTTAACTTGTGCTTCATTAAATTTCTTCATGTTGATATTTAAGACACTGCACAGAA 8286244 Query 517 ATCACATTGCGTCAACA 533 |||||||| | |||||| Sbjct 8286245 ATCACATTACATCAACA 8286261 >seq217 Length=3091153 Score = 122 bits (134), Expect = 3e-25 Identities = 109/134 (81%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||||| | |||||||||||| | ||||||||| |||||||| ||||||| || Sbjct 867458 CCATTCATATACACCACTAATTAGATCAT-AGGCATTTGATTACCTTAAAAGAGTCACAG 867400 Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||||| || ||||||| || ||| |||||||||||||| |||| ||||||||||| Sbjct 867399 TTACTCT-GCTGTTTACCTGCACTTCACTGAATTTCTTCACTGTGACTTTCAGAGCACTA 867341 Query 510 GGCAGAAATCACAT 523 ||| ||||||||| Sbjct 867340 TGCAAAAATCACAT 867327 >seq167 Length=4397592 Score = 105 bits (116), Expect = 2e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| ||||||| ||||||| || | |||| | ||||||||||||||| ||| | Sbjct 339042 TTCTGCTCCACAGGAGGTTTCTGTCCTTCCTGAGCTCGCCTTAGGACACCTGCATTACCG 339101 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||||||||| || |||| Sbjct 339102 TTTGACAGGTGTACCTCCCCAGTCAAACTCCCCACCTGGCACTGTC 339147 >seq50 Length=11047261 Score = 100 bits (110), Expect = 9e-19 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||| |||||||||||||||||||||| ||||||||| || | |||||| ||| | Sbjct 2021459 GATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCAAGCTCATCACTAGTTAATT 2021400 Query 416 GACGAGGCATTTGGCTACCT 435 ||| |||||||||| ||||| Sbjct 2021399 GACAAGGCATTTGGTTACCT 2021380 >seq92 Length=7293603 Score = 77.0 bits (84), Expect = 1e-11 Identities = 122/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 |||||| |||||| || || ||| | ||||| ||| | ||| | | ||| | Sbjct 2379684 TGGTTTTGCTAGACAGGAGGATGGGGCTGTGGGTTCCTCACTCATC-ACTGATGTATCTT 2379626 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||||||||||| || ||| || ||||| ||||| ||| | ||||||| | | | ||| Sbjct 2379625 ACTAATTAGATGATGATGCACTTAGCTACATTAAGGGAG--ACAGTTACTTCTGGCATTT 2379568 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 | | | || | || |||||||||| |||| | ||||||||||| ||| Sbjct 2379567 ATCTACTCTATATCAAACTTCTTCACTTGGACACTACAAGCACTGGGCAAAAA 2379515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634995877984