Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq34 172 2e-40
seq61 80.6 8e-13
>seq34
Length=13552858
Score = 172 bits (190), Expect = 2e-40
Identities = 133/158 (84%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85
|||||| ||||||| ||||| |||||||||||||| | || |||| |||||||||||
Sbjct 13456712 AAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTCCTCAGGTTGGGAGTGGGTAATTTG 13456771
Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145
|| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 13456772 TGCACCTGCTGCCTTACTTGGATGTGGTAGCCGTTTCTCAGGCTCCCACTCCAAAATCGA 13456831
Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
||||| |||| ||| ||| || | | ||||||||||
Sbjct 13456832 ACCCTGATTCTTCGTCACCTGTGGTCATCATGGTAGGC 13456869
>seq61
Length=9816117
Score = 80.6 bits (88), Expect = 8e-13
Identities = 112/152 (74%), Gaps = 10/152 (7%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGTA--CTATCAAA 398
||||| ||| ||||| ||||| |||| ||||| || ||| | | || | | ||||
Sbjct 4842258 GCATGCATTTGCTCTGGAATTGCCACAGTTATGCAAGTAAGAGAGACGTGAGCAACCAAA 4842317
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT--AGATTGCTTATACT 456
||| |||||||||| ||||||||| ||| | |||||| | | ||| || ||
Sbjct 4842318 GGAACCGTAACTGATTTCCTGAGCCATTTACAGATCCACTGTCCCCACAGTGCGTA--CT 4842375
Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGC 488
||||||||||||||||||||| | || |||||
Sbjct 4842376 TAGACATGCATGGCTTAATCTCT-AGTCAAGC 4842406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510211456768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |