Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq34 172 2e-40 seq61 80.6 8e-13 >seq34 Length=13552858 Score = 172 bits (190), Expect = 2e-40 Identities = 133/158 (84%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| ||||||| ||||| |||||||||||||| | || |||| ||||||||||| Sbjct 13456712 AAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTCCTCAGGTTGGGAGTGGGTAATTTG 13456771 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 || ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| Sbjct 13456772 TGCACCTGCTGCCTTACTTGGATGTGGTAGCCGTTTCTCAGGCTCCCACTCCAAAATCGA 13456831 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||| |||| ||| ||| || | | |||||||||| Sbjct 13456832 ACCCTGATTCTTCGTCACCTGTGGTCATCATGGTAGGC 13456869 >seq61 Length=9816117 Score = 80.6 bits (88), Expect = 8e-13 Identities = 112/152 (74%), Gaps = 10/152 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---AGGTA--CTATCAAA 398 ||||| ||| ||||| ||||| |||| ||||| || ||| | | || | | |||| Sbjct 4842258 GCATGCATTTGCTCTGGAATTGCCACAGTTATGCAAGTAAGAGAGACGTGAGCAACCAAA 4842317 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT--AGATTGCTTATACT 456 ||| |||||||||| ||||||||| ||| | |||||| | | ||| || || Sbjct 4842318 GGAACCGTAACTGATTTCCTGAGCCATTTACAGATCCACTGTCCCCACAGTGCGTA--CT 4842375 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||||||||||||||||||| | || ||||| Sbjct 4842376 TAGACATGCATGGCTTAATCTCT-AGTCAAGC 4842406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510211456768